Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00423 ATGAATGGGAAGGATGAATTTGAAGTTGAGAATAGGACGAGTGATCCTATGAGTATCTCCTCCGCCTGGCAATTTGCTGCTCCTAATCTTACTAATGAGTCAGTGGGATTTGATTCGACCGGGAATCCTTCTGTTGTTAGCAATGGGGATCTGGGTGTTCCTTCTTGTCCTTCAACTTCAATGTCTAACTTATTTACTCCAGCGCTTTTGAACCATCATACGGAATCGCAAAATTCAGGGTTCTGCACCACTTTCAATGAACAAAACAGCATAGTTGCTTCTAATACGACTTTAGTTGATGGAGAGGATCTGAATTCTTTGAGATCAAATGGTGATACTAGAACACTGGGTATGGATTGGAACCAACAAAATCCATGGATGAAAGGAGTTTTTTCAGGAAACGTTCCTGGAATATTTCCACCTAATTTGTCTCAACTTCCAGCTGATTCAGCATTCATAGAACGTGCAGCAAGGTTCTCCTGCTTCAATAACGGAGTTTTTGGAGCTCCGCCTGCAGGTCCATTCGGCATTTCAGACGCTATAGGCATTCATTCTGGGGGTGGATTTGGAAGGCAAGAAGTTATTTCAAGAAATGGAGCCTCCAAAGATGTATCTTTGCCCATGGAACTTGAGGCTAAAGAAAAGAGTCCACCTAAGAATGAGAAAGACAGTGAAATGTCTCAAGACCGGGCTAAACAGGGTTGTGTTGGTGAGTCTGGCAATGATTCTGATGAAGCTGGGTTCAGCGGTGGTCAAGATGAGCAATGCACGATGGGAGGTACCATGACAGAACCATCTACAGAAGGACTATGCTTTAAGAAAAGGAAAAGGGGTGAGCAGAATGTGGGACTTGGACAAGTTAAAGAAGCTCCGCAACAAATCAATGAAACTGCAAAGAACGGAGCATTTAATCAGCAGAAGGGAGGCCAAAACCCAAGTTCTACTACTAGCAAGCCTGCTGGGAAGCAAGGAAAACAAGATTCTCAACCATCAGATGCTCCCAAAGAAGAATACATTCATGTTAGAGCTCGAAGAGGACAGGCAACCAACAGCCATAGTCTTGCTGAAAGGGTTAGAAGAGAAAAGATAAGTGAAAGAATGAGGCTCCTTCAGGACCTTGTGCCTGGGTGTAGTAAGGTCACCGGAAAAGCTGTAATGCTTGATGAAATCATTAACTATGTACAGTCGCTGCAACGACAAGTTGAGTTTTTGTCAATGAAACTTGCAACAGTTAATCCCAGGCTTGATTTTAACATCGAAGAGCTCCTCACAAAAGAACTCATTCAATCCAAGGCTGGTCCATCCCTGTTTGGTTTTCCTCCTGATATGCCCGTGCCTTACCTCCCTCAACATTCGTCTCACCATGGACTTATTCCGCCTTGTCTTCCTACAATGGGGAGCTCTCCGGACCTGCTACGAAGAACAATTAATTCCCAGCTGACATCACTTGTTGGTGGATTCAAGGAGCCTGTTCAGCTGCCAAACCGATGGGAGAATGAACTCCACAATGTTGTTCCAATGAACTTTGATGTCTCCGCACCCTCCAGTGGTCAAGATGTTGATGGTTCTAATCCACAATGCAACACCAGAGCAGAACTCTAA 1602 44.32 MNGKDEFEVENRTSDPMSISSAWQFAAPNLTNESVGFDSTGNPSVVSNGDLGVPSCPSTSMSNLFTPALLNHHTESQNSGFCTTFNEQNSIVASNTTLVDGEDLNSLRSNGDTRTLGMDWNQQNPWMKGVFSGNVPGIFPPNLSQLPADSAFIERAARFSCFNNGVFGAPPAGPFGISDAIGIHSGGGFGRQEVISRNGASKDVSLPMELEAKEKSPPKNEKDSEMSQDRAKQGCVGESGNDSDEAGFSGGQDEQCTMGGTMTEPSTEGLCFKKRKRGEQNVGLGQVKEAPQQINETAKNGAFNQQKGGQNPSSTTSKPAGKQGKQDSQPSDAPKEEYIHVRARRGQATNSHSLAERVRREKISERMRLLQDLVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRLDFNIEELLTKELIQSKAGPSLFGFPPDMPVPYLPQHSSHHGLIPPCLPTMGSSPDLLRRTINSQLTSLVGGFKEPVQLPNRWENELHNVVPMNFDVSAPSSGQDVDGSNPQCNTRAEL* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3739941 3742448 + Chy9G161390.1 Chy09g00423 233320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00423 533 MobiDBLite consensus disorder prediction 301 334 - -
Chy09g00423 533 MobiDBLite consensus disorder prediction 207 229 - -
Chy09g00423 533 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 40 531 IPR024097 GO:0006355
Chy09g00423 533 CDD bHLH_AtBPE_like 337 422 - -
Chy09g00423 533 Pfam Helix-loop-helix DNA-binding domain 350 398 IPR011598 GO:0046983
Chy09g00423 533 PANTHER TRANSCRIPTION FACTOR BHLH49 40 531 - -
Chy09g00423 533 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 397 IPR011598 GO:0046983
Chy09g00423 533 MobiDBLite consensus disorder prediction 200 271 - -
Chy09g00423 533 MobiDBLite consensus disorder prediction 301 328 - -
Chy09g00423 533 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 416 IPR036638 GO:0046983
Chy09g00423 533 SMART finulus 353 403 IPR011598 GO:0046983
Chy09g00423 533 Gene3D - 344 418 IPR036638 GO:0046983
Chy09g00423 533 MobiDBLite consensus disorder prediction 510 533 - -
Chy09g00423 533 MobiDBLite consensus disorder prediction 245 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01884 Chy-Chr2:21655159 Chy09g00423 Chy-Chr9:3739941 9.62E-12 dispersed
Chy02g02357 Chy-Chr2:27456766 Chy09g00423 Chy-Chr9:3739941 1.35E-37 dispersed
Chy03g01616 Chy-Chr3:18101152 Chy09g00423 Chy-Chr9:3739941 4.26E-42 dispersed
Chy06g00829 Chy-Chr6:5866149 Chy09g00423 Chy-Chr9:3739941 1.99E-61 dispersed
Chy07g00212 Chy-Chr7:1716195 Chy09g00423 Chy-Chr9:3739941 6.53E-53 dispersed
Chy09g00423 Chy-Chr9:3739941 Chy10g01083 Chy-Chr10:15909181 5.07E-144 dispersed
Chy09g00423 Chy-Chr9:3739941 Chy01g00774 Chy-Chr1:5949888 6.20E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18471 PF00010 HLH 6.60E-06 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00423 - - csv:101216110 1059.28