Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00439 ATGAATGGGGATGTAGCTCCGGCCGCCACTCCGGCCACCTCAGCCGAGCCCCAATACATCAGGGCTAAGACTTCTGTTTGGTGGGACATCGAGAACTGTCAGGTCCCTAAGGGATGTGATCCTCACGCCATCGCCCAAAACATCAGTTCTGCCCTCGTCAAAATCAACTATTGTGGCCCTGTCTCCATTTCCGCTTATGGGGATACCAATCGCATTCCTAATTCTATTCAGCAGGCTCTTTCTAGTACTGGCATCGCTTTGAATCATGTTCCTGCTGGTGTTAAAGATGCAAGTGATAAGAAGATTCTAGTCGATATGTTGTTTTGGGCAGTTGATAACCCTGCTCCTGCAAATTATTTGCTAATTTCGGGTGATAGGGATTTTTCTAACGCACTTCATCAATTAAGAATGAGAAGATATAATATTCTTCTTGCGCAGCCACAAAAGGCTTCTGCACCACTAGTAGCAGCAGCAAAGAGTGTTTGGCTTTGGATGAGTCTTGTAGCTGGTGGACTTCCAATATCCAGTACTGAATCATCTCAACTTGTGAATGGTATCCCTACTTCTGAACCTCAAATATCTCAGACCTCTGGATTTGATCATAATCAGCACACAGGACAAGCTATAGTATACAAACCTGAAAATGTCAATTTGGGAAACCAAAGATCTTATTCTACCGAGAGGATGGGCGACAATAAACATAAAGGTAAATATGTACAGAAAAGCTCCAACCAACCAGTTATATCCAGAGCTTTAAGCTCACCTGCATCTATGCAAGAGAAAAACCCTAATTTTTTAAACCAACCAAATCATATGCAAGCAAAGCAGTTTAAGAAAGCACCCCATGAATTCTTTGGAAATGGCAATCCTGTAGGCTCTTCTAGTCAATCTACTCCAAACTTGTTTATTGAAAATTCCAGCCATGCTAGGATTGATGGCAATGGTTCAATGGGTAGTTCCTCATGTTACCAACCTCCTCACCTGACTCATGCTAGGTCTGATGGCAATATTTCAATGAGTAATTCCTCAAGTTACCAACCTCCTCACATGAGGCAAAACAACATGCAGCTCCATCCTCCTTTTCGACCGGATAATGTTTTTCCTCCTAACTCTCTTAATCATTATTCTTTTCCAGTCCCTGGTCAACCTGATCTCCCTGCACCCAATATTAGTCAGCTACATATCTCTGATTATCCCAATTATCCTATAAATCCTCAAAATTTCCATCAACAAACTGGTGAATTTAGACCACATTCTAAGTCTCAAATTCCTGCTAACTTTAATGCACCTGACAAAAGCCGTAGTCAGCATGGTGGCCAATCATTCCATCATGATGCATTGAATAAAAGACATGCCCGTGATGCAGTAGAGTATACACCTCATTCATCTTTTACCACTGTTACTAGAAGTTTATCTCATAACGATGGCTGGGGATCTCAGGGGCAACCACCACCATCAGAGTACATTCAAGGCCTCATTGGAGTTATTCTTCTTGCATTGAACACCCTGAAAGTGGAAAAAATTATGCCAAAGGAGGAAAATATAGCTGACTGCATACGATATGGAGATTTGAGAAACTGCAATACTGATGTAAAAATGGCACTAGATAGTGCGATAGAACATAATATGGTAGTGAAGCAGGAGATAGGAGAACTGCAATTGTATGTTGGTAAAACAGAAAAACTGTGGAAATGTGTGAACCCTCTAGGTGGGTATCCTAATCAGTACCCAAAAGCCACATGGGATAAGATTCATAATTTTTTAGCTTCTCCAGCTGGTCGTTCTGCAATGGTGGCTTCGTGTTGCAGATATGAAGCAGCATTGATTCTGAAGAAAGAATGCTTAACAGATTTTGCTTTGGGCGATGTGCTTCAGATTTTGCATATGATAACCTCCATGAAGAAATGGATTACTCATCATAATCCAGGATGGCAGCCAATTAATATTATACTAGCAGAAGGTAATACAGATGCAAGTTCAAGAACTGAACTTGATTGA 1998 41.29 MNGDVAPAATPATSAEPQYIRAKTSVWWDIENCQVPKGCDPHAIAQNISSALVKINYCGPVSISAYGDTNRIPNSIQQALSSTGIALNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWMSLVAGGLPISSTESSQLVNGIPTSEPQISQTSGFDHNQHTGQAIVYKPENVNLGNQRSYSTERMGDNKHKGKYVQKSSNQPVISRALSSPASMQEKNPNFLNQPNHMQAKQFKKAPHEFFGNGNPVGSSSQSTPNLFIENSSHARIDGNGSMGSSSCYQPPHLTHARSDGNISMSNSSSYQPPHMRQNNMQLHPPFRPDNVFPPNSLNHYSFPVPGQPDLPAPNISQLHISDYPNYPINPQNFHQQTGEFRPHSKSQIPANFNAPDKSRSQHGGQSFHHDALNKRHARDAVEYTPHSSFTTVTRSLSHNDGWGSQGQPPPSEYIQGLIGVILLALNTLKVEKIMPKEENIADCIRYGDLRNCNTDVKMALDSAIEHNMVVKQEIGELQLYVGKTEKLWKCVNPLGGYPNQYPKATWDKIHNFLASPAGRSAMVASCCRYEAALILKKECLTDFALGDVLQILHMITSMKKWITHHNPGWQPINIILAEGNTDASSRTELD* 666
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3899773 3902751 - Chy9G161550.1 Chy09g00439 233336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00439 665 Pfam OST-HTH Associated domain 602 655 IPR025677 -
Chy09g00439 665 Gene3D - 18 166 - -
Chy09g00439 665 PANTHER LIMKAIN B LKAP 14 648 IPR024768 GO:0005777|GO:0010468|GO:1903231
Chy09g00439 665 MobiDBLite consensus disorder prediction 401 446 - -
Chy09g00439 665 MobiDBLite consensus disorder prediction 401 436 - -
Chy09g00439 665 MobiDBLite consensus disorder prediction 310 334 - -
Chy09g00439 665 PANTHER ACID BINDING PROTEIN, PUTATIVE-RELATED 14 648 - -
Chy09g00439 665 MobiDBLite consensus disorder prediction 222 244 - -
Chy09g00439 665 CDD PIN_limkain_b1_N_like 23 147 - -
Chy09g00439 665 Pfam NYN domain 23 159 IPR021139 GO:0004540
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g01088 Chy-Chr6:9065262 Chy09g00439 Chy-Chr9:3899773 2.48E-32 dispersed
Chy09g00439 Chy-Chr9:3899773 Chy11g00068 Chy-Chr11:747014 5.04E-31 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00439 - - cmo:103503825 1264.98