Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00445 ATGGCTGTTGACGTTCTTTCCTCTGTTTCTCAAGAACCCATCTCTTTTCCTAATGCTCTTCATGATTCTCCTACAAACCCAGATGGACTACTCCATCCTCTTTCCACCCACTCTGTTTCTCAACCTCCATTCATCCATGATTCCGACAATCCCAAGCTCACCCCTAAGCTTTCCATTCCTCACCCTTTACATGAGAATCAAACCAAGCTCTCAGATATTGAATCTCCCTCTTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTTCCTCTTTCGATACAGAGAAATCAGAGGATTCTATTTCTACCCATCATAACGGTCATATTCCTGTTCGTCCCCACCACCAATTGGAACCCAATAATGGCGAAGTACGCGTATTGGAGCCTCATTCTCAACTTCCTAAACCCGAGGCCCCACCTGGGATTTCCCTATCCTCCGCCGATGAACCACCGCACAAACGGTCCCAGAGTTTGTCTGAGAATATATCTGTCGACATGCCCTCGATTGGGAAGTTTATACGTGAGAGAAGCAATAGCTTATCAGCCGCGATTTTCAAGCGGATTTCGTCGCTTAAAGATGAAGACAAGGACGACGAGGACGACAACCAGAAGTCCCAAACCGGTGTGACCGAAATCAATCTCTCCGGTCTCAAAGTCGTGGTGAAATTGAAGAGCGATAAAGAGAGAGACAGAGAACTAAAGGGAAGAATCAGCTTCTTCTCCAGGTCGAATTGCAGGGATTGTAAAGCGGTTAGGAGTTTTTTCAACGAAAAGGGATTGAGGTTCGTTGAAATCAACGTCGATGTTTTTCCTCAAAGAGAGAAGGAGCTGATGAAGAGGACGGGAAGTACATTAGTGCCGCAGATTTTCTTCAACGACAAGCTCTTTGGAGGTCTTGTAGCCTTAAACTCCCTAAGAAACAGCGGCGAATTCGACCGAAGAGTCAAAGATATGCTTAGCCATAAATGTCCTGACGACGCACCGGCTCCGCCAGTGTACGGTTTCGACGACCCAGATGAAGGATCGCCAGACGAACTACTAGAGATCGTGAAATTCCTGAGACAGAGATTGCCGATTCAGGACCGTCTGATCAAGATGAAGATCGTCAAGAACTGCTTCTCCGGCAGCGAAATGGTAGAAGCGCTTATTCACCGCCTTGACTGCGGGCGTAGAAAGGCTGTTGAAATTGGAAAGCAGATGACCCAGAAGCTCTTTATTCATCATGTCTTTGGGGAAAATGAATTTGAAGATGGGAATCACTTCTATAGATTCCTTGAGCATGGGCCGTTTATATCTCGTTGCTTCAATTTCAGGGGCTCAGTTAATGACAATGAGCCCAAGCCCGCTGCCATTGTTGCACAAAAGCTCGCCAAGATCATGTCTGCCATTTTAGAATCTTATGCCTCTGAAGATCTCCAACATGTTGATTATCTCACCATTAGCAACACTGAAGAATTTCGAAGATACATAAATGTAATAGAAGACCTTCACCGCGTGAACCTCTTGGAACTGTCACATAATGAAAAATTGGCTTTTTTCCTAAACCTTTACAATGCTATGGTGATTCATGGGTTGATAAGATTTGGACGACTAGAGGGTGTAATTGACAGAAAATCCTTCTTCTCGGATTTCCAATACTTGGTCGGTGGACACCCATATTCACTTATAGCCATAAAGAATGGGATTCTCAGAGGCAATAGGAGGCCACCTTATTCCTTTGTTAAGCCCTTCAGTAGTTCTGACAAGCGATTGGAGCTTGCTTATGGGGAAGTGAATCCATTAATTCACTTTGGACTGTGCAATGGCACAAAGTCAAGCCCAAGAGTGAGATTCTATACTCCTCAAGGAGTCGAAGCAGAGCTAAGATGCGCCGCAAGAGAATTCTTCCAAAGTGGAGGAGTGGAGGTTGACTTGGACAAAAGAACTGTTTATCTCACTGGAATCATCAAGTGGTTCAGTGTGGACTTTGGGCATGAGAAAGAAATCTTGACGTGGATAATGAAGTTCTTGGATGCCAACAAAGCAGGATTTTTAACACACCTTTTGGGAGATGGAGGTCCAGTCAACATAGCTTACCAAAACTATAATTGGACCATGAATTCTTCTTAA 2106 44.68 MAVDVLSSVSQEPISFPNALHDSPTNPDGLLHPLSTHSVSQPPFIHDSDNPKLTPKLSIPHPLHENQTKLSDIESPSSSSSSSSSSSSSSFDTEKSEDSISTHHNGHIPVRPHHQLEPNNGEVRVLEPHSQLPKPEAPPGISLSSADEPPHKRSQSLSENISVDMPSIGKFIRERSNSLSAAIFKRISSLKDEDKDDEDDNQKSQTGVTEINLSGLKVVVKLKSDKERDRELKGRISFFSRSNCRDCKAVRSFFNEKGLRFVEINVDVFPQREKELMKRTGSTLVPQIFFNDKLFGGLVALNSLRNSGEFDRRVKDMLSHKCPDDAPAPPVYGFDDPDEGSPDELLEIVKFLRQRLPIQDRLIKMKIVKNCFSGSEMVEALIHRLDCGRRKAVEIGKQMTQKLFIHHVFGENEFEDGNHFYRFLEHGPFISRCFNFRGSVNDNEPKPAAIVAQKLAKIMSAILESYASEDLQHVDYLTISNTEEFRRYINVIEDLHRVNLLELSHNEKLAFFLNLYNAMVIHGLIRFGRLEGVIDRKSFFSDFQYLVGGHPYSLIAIKNGILRGNRRPPYSFVKPFSSSDKRLELAYGEVNPLIHFGLCNGTKSSPRVRFYTPQGVEAELRCAAREFFQSGGVEVDLDKRTVYLTGIIKWFSVDFGHEKEILTWIMKFLDANKAGFLTHLLGDGGPVNIAYQNYNWTMNSS* 702
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3953594 3960617 + Chy9G161610.1 Chy09g00445 233342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00445 701 CDD DEP 344 422 - -
Chy09g00445 701 Gene3D Glutaredoxin 232 318 - -
Chy09g00445 701 PANTHER ELECTRON CARRIER/ PROTEIN DISULFIDE OXIDOREDUCTASE 83 700 - -
Chy09g00445 701 ProSiteProfiles DEP domain profile. 352 425 IPR000591 GO:0035556
Chy09g00445 701 SUPERFAMILY Winged helix DNA-binding domain 343 446 IPR036390 -
Chy09g00445 701 Gene3D - 343 474 IPR036388 -
Chy09g00445 701 MobiDBLite consensus disorder prediction 1 161 - -
Chy09g00445 701 MobiDBLite consensus disorder prediction 8 22 - -
Chy09g00445 701 MobiDBLite consensus disorder prediction 29 47 - -
Chy09g00445 701 SMART DEP_3 352 425 IPR000591 GO:0035556
Chy09g00445 701 Pfam Glutaredoxin 238 294 IPR002109 -
Chy09g00445 701 Pfam Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) 356 423 IPR000591 GO:0035556
Chy09g00445 701 ProSiteProfiles Glutaredoxin domain profile. 224 321 - -
Chy09g00445 701 PANTHER F26K24.21 PROTEIN 83 700 - -
Chy09g00445 701 MobiDBLite consensus disorder prediction 69 95 - -
Chy09g00445 701 Pfam Protein of unknown function, DUF547 502 627 IPR006869 -
Chy09g00445 701 SUPERFAMILY Thioredoxin-like 234 316 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00445 - - - csv:101218879 1351.27
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00066 Chy-Chr3:667300 Chy09g00445 Chy-Chr9:3953594 1.02E-132 dispersed
Chy09g00445 Chy-Chr9:3953594 Chy11g00157 Chy-Chr11:1565281 9.42E-20 dispersed
Chy09g00445 Chy-Chr9:3953594 Chy02g00922 Chy-Chr2:6060606 1.42E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1073 . . . . . . Bma14g01625 . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0665 Cone19ag0662 . . . . . . . . Bda07g01448 . Bpe11g01619 . . . . . Cmo15g00895 . Cma15g00860 . Car15g00811 . . . . . . . . . . . . . . . . . . Chy09g00445 Cme09g01240
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007007 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 0 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00445 Chy_Chr09 FPKM 0.0 0.0 1.57656 0.0 0.0 0.0 0.0 0.0 0.0 0.0