Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00458 ATGCCTAAGGATTGTAAAAACAGGGAGGTTTATCATAGTGTCAAAGGTCATGGGAGTGCCAATGGTGGCGGTTTTCCCTTAAAGACCGAAGTCGTGGCCACAACGAGTTTGAGGTGTCAGGGATATGTTGCAGCGGTTGAGGTAGACGTTGTTGGCATATCAGATGGCAGAGGAAGCGAAGCTCGTGTGGGTTCTTCGAGTGGTGATACACTATTTTCCATTTCTTCCCATTCTTCACTTTTCTACTATAAAATACAATCTTCTGTTTTCATCCTTTCTCCACCATTCTACCCAAACCCAAAAATAATGGTGATCTCCAAAACTTTCTATGAATCTGATGTTTCCATACACTCCACATTCGCCTCTCCCTACGTTCGGAACTCTGCTCCAAGGTTCACCATCCCCAACAACTCCATGCCCAAAGATGTCGCCTTCCAAATCATCAACGACGAGCTCATGCTCGACGGCAACCCCAGGCTCAATCTAGCCAGCTTCGTCACTACTTGGATGGAACCCGAATGTGATAGGCTCATCATGGACTCTATCAACAAAAACTACGTCGACATGGATGAATACCCCATCACTACTGAGCTTCAAAACCGTTGCGTCAACATGATTGCTAATCTCTTTAATGCACCCTTAGGAGACTCCGACGCCGCTGTCGGAGTTGGGACGGTGGGCTCGTCAGAGGCCATCATGCTAGCAGGGCTTGCGTTCAAGAGGAAGTGGCAGAACAAAAGGAAGGCGGAAGGGAAGCCTTATGACAAACCAAATATTGTGATGGGTGCCAATGTGCAAGTTTGTTGGGAGAAATTTGCAAGATACTTTGAGGTTGAGTTGAAGAAAGTTAAAGTGAGAGAAGGGTATTACGTGATGGACCCTGTTCAAGCCGTTGAGATGGTGGATGAGAACACTATTTGTGTTGCTGCCATTTTGGGGTCAACTTACAATGGGGAATTTGAAGACGTGAAACTGTTGAATGATTTGTTGGTGGAGAAGAATAAGGAAAGTGGATGGGATACGCCTATTCATGTGGATGCTGCCAGTGGTGGGTTCATAGCCCCATTTTTGTATCCAGAGCTTGAATGGGACTTCAGGCTTCCTTTGGTGAAGAGCATCAATGTGAGTGGCCATAAGTATGGGCTTGTCTATGCTGGAATTGGTTGGGTAATTTGGAGAACTAAAGAAGATTTGGCTGAAGAGCTCATTTTCCATATCAATTACCTTGGAGCGAATCAACCCACTTTCACTCTCAACTTCTCCAAAGGATCAAGCCAAATCATTGCTCAATATTATCAACTAATCCGGTTGGGTTACGAGGGATACCGAAACGTGATGCAGAATTGTCACGAGAATGCAACGGTGTTGAAGGAAGGAGTTGAAAAGACAGGGAGGTTCAGGATAGTGTCAAAGGACATGGGAGTGCCAGTGGTGGCATTTTCTCTCAAAGACCGAAGCCGCCACGACGAGTTTAAGGTGTCAGAGATGCTGCGGCGGTTCGGGTGGATAGTGCCAGCGTATCCGATGCCAGAAGGGGCAAAGCACGTGTTGGTTCTTCGTGTGGTGATTAGAGAAGATTTCTCTCGCACGCTGGCGGACAGGCTTGTGGTGGATATCGTAAAAGTAATGGGAGAGTTAGATAGTAGTGTTCCTATTCCACCAATTCCAAAGAAGAGTGAGAAAATGGTGAGGTTAGAAAAAGGTAAAAAGGAAAGGAGTGGGAAGAAGACGGCAGAGGTAACTACAAAGAGGGAAATAGGGGCTTATTGGGGGAATATAACAACTGGTAGGAAAATCAAGCTTGCTGCCAATCTGGGTGGTCCTTCAGTTAATGTAATTGCCTAA 1845 46.02 MPKDCKNREVYHSVKGHGSANGGGFPLKTEVVATTSLRCQGYVAAVEVDVVGISDGRGSEARVGSSSGDTLFSISSHSSLFYYKIQSSVFILSPPFYPNPKIMVISKTFYESDVSIHSTFASPYVRNSAPRFTIPNNSMPKDVAFQIINDELMLDGNPRLNLASFVTTWMEPECDRLIMDSINKNYVDMDEYPITTELQNRCVNMIANLFNAPLGDSDAAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVMGANVQVCWEKFARYFEVELKKVKVREGYYVMDPVQAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNKESGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLAEELIFHINYLGANQPTFTLNFSKGSSQIIAQYYQLIRLGYEGYRNVMQNCHENATVLKEGVEKTGRFRIVSKDMGVPVVAFSLKDRSRHDEFKVSEMLRRFGWIVPAYPMPEGAKHVLVLRVVIREDFSRTLADRLVVDIVKVMGELDSSVPIPPIPKKSEKMVRLEKGKKERSGKKTAEVTTKREIGAYWGNITTGRKIKLAANLGGPSVNVIA* 615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4070855 4074341 - Chy9G161740.1 Chy09g00458 233355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00458 614 PANTHER GLUTAMATE DECARBOXYLASE 103 599 - -
Chy09g00458 614 Gene3D - 168 462 IPR015421 GO:0003824
Chy09g00458 614 PANTHER GLUTAMATE DECARBOXYLASE 103 599 IPR010107 GO:0004351|GO:0006536|GO:0030170
Chy09g00458 614 Pfam Pyridoxal-dependent decarboxylase conserved domain 135 483 IPR002129 GO:0016830|GO:0019752|GO:0030170
Chy09g00458 614 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 118 546 IPR010107 GO:0004351|GO:0006536|GO:0030170
Chy09g00458 614 CDD DOPA_deC_like 161 541 - -
Chy09g00458 614 Gene3D - 463 549 - -
Chy09g00458 614 SUPERFAMILY PLP-dependent transferases 117 546 IPR015424 -
Chy09g00458 614 Gene3D - 103 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00520 Chy-Chr3:7180790 Chy09g00458 Chy-Chr9:4070855 5.22E-09 dispersed
Chy09g00458 Chy-Chr9:4070855 Chy12g01583 Chy-Chr12:19343793 0 dispersed
Chy09g00458 Chy-Chr9:4070855 Chy09g00459 Chy-Chr9:4089362 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00458 K01580 - csv:101214676 1000.35