Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00459 ATGGTGTTGTCCAAAACTTTCTCTGCATCCGATGTTTCCATACACTCCACTTTCGCCTCTCGCTACGTTCGCGACTCAGCTCCACGCTTCACCATGCCCGATAACTCCATTCCCAAGGAAGCCGCCTTCCAAATCATCAACGACGAGCTCATGCTCGACGGCAACCCCAGGCTCAATCTAGCCTCCTTCGTCACCACTTGGATGGAGCCCGAATGTGATAAGCTCATTATGGACTCTGTCAACAAAAACTACGTCGACATGGATGAATACCCCGTTACTACTGAGCTTCAAAACCGTTGTGTCAACATGATTGCACATCTCTTCAATGCACCCTTGGGAGACTCTGACACCGCCGTTGGTGTCGGGACGGTGGGGTCGTCCGAGGCCATCATGTTGGCAGGGCTTGCCTTCAAGAGGAAGTGGCAGAACAAAAGGAAGGCGGAAGGGAAGCCTTATGACAAACCAAATATTGTGACGGGTGCTAATGTTCAAGTTTGTTGGGAGAAATTTGCAAGATACTTTGAGGTTGAGTTGAAGGAAGTTAAGGTGAGAGAAGGGTATTACGTGATGGACCCTGTTCAAGCCGTTGAGATGGTGGATGAGAACACTATTTGTGTTGCTGCCATTTTGGGGTCAACTTACAATGGGGAATTTGAAGACGTGAAGCTGTTGAACGATTTGCTGGTGGAGAAGAATAAGGAAAGTGGATGGGATACGCCTATTCATGTGGATGCTGCCAGTGGTGGGTTCATAGCCCCATTTTTGTACCCAGAGCTTGAATGGGACTTCAGGCTTCCTTTAGTGAAGAGTATCAATGTGAGTGGCCATAAGTATGGGCTTGTCTATGCTGGCATTGGTTGGGTGATCTGGAGAACCAAAGAAGATTTGCCTGAAGAACTCATTTTCCACATCAATTACCTTGGAGCGGATCAACCCACTTTCACTCTCAACTTCTCCAAAGGATCAAGCCAAATCATTGCTCAATATTATCAACTAATCCGGTTGGGTTTCGAGGGATACCGAAATGTGATGCAAAATTGTCACGACAATGCAATGGTGTTGAAGGAAGGGCTTGAAAACACAGGGAGGTTCACCATAGTGTCAAAGGACATGGGAGTGCCAGTAGTGGCATTTTCCCTCAAAGACCGAAGCCGCCACGACGAGTTTGAGGTGTCAGAGATGTTGAGACGATTCGGGTGGATTGTCCCGGCTTATCCAATGCCAGATGGAGCGAAGCACGTGTCGGTTCTTCGTGTGGTGATTAGAGAAGATTTCTCTCGCACGCTTGCGGAGCGACTTGTGCTCGATATCGTAAAGGTATTGGCAGAGCTAGACACTCTTCCACCAAAGAAGGGTGAAAAAATGGAGAGCTTAGAGAATGGTAAAAAGGAAACGAGTGGGAAGAAGAGTGCAGAGGAGACAGAGAGGGAAATAGCAACTTATTGGAGGAATATAACGAATGCTAGGAAAATCAAGCTTGCTGCTACTATGGCTGGTCCTTCGGTTACAGTAGTTGCCAAATAA 1524 47.51 MVLSKTFSASDVSIHSTFASRYVRDSAPRFTMPDNSIPKEAAFQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSVNKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLGDSDTAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKVREGYYVMDPVQAVEMVDENTICVAAILGSTYNGEFEDVKLLNDLLVEKNKESGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRTKEDLPEELIFHINYLGADQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYRNVMQNCHDNAMVLKEGLENTGRFTIVSKDMGVPVVAFSLKDRSRHDEFEVSEMLRRFGWIVPAYPMPDGAKHVSVLRVVIREDFSRTLAERLVLDIVKVLAELDTLPPKKGEKMESLENGKKETSGKKSAEETEREIATYWRNITNARKIKLAATMAGPSVTVVAK* 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4089362 4090979 + Chy9G161750.1 Chy09g00459 233356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00459 507 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
Chy09g00459 507 MobiDBLite consensus disorder prediction 451 474 - -
Chy09g00459 507 CDD DOPA_deC_like 59 439 - -
Chy09g00459 507 Gene3D - 361 448 - -
Chy09g00459 507 Gene3D - 1 65 - -
Chy09g00459 507 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Chy09g00459 507 Gene3D - 66 360 IPR015421 GO:0003824
Chy09g00459 507 PANTHER GLUTAMATE DECARBOXYLASE 1 491 IPR010107 GO:0004351|GO:0006536|GO:0030170
Chy09g00459 507 SUPERFAMILY PLP-dependent transferases 16 444 IPR015424 -
Chy09g00459 507 PANTHER GLUTAMATE DECARBOXYLASE 1 491 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00459 Chy-Chr9:4089362 Chy12g01583 Chy-Chr12:19343793 0 dispersed
Chy09g00458 Chy-Chr9:4070855 Chy09g00459 Chy-Chr9:4089362 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00459 K01580 - csv:101208026 1011.52