Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00467 ATGGAGAAGAAGAAAACCCATTTCGGGAACAAGCATTTTCTCATCTTAGCCATCTTCTCAATCTTCCACTCTGTTGAACCCCTAGAACTTAGCCCTGATGCTCCTGCAATGACGGCTCTCAAAAAGAGCCTAAACCCAACTGAATCCCTTGGCTGGTCCGACCCCAACCCTTGCAAATGGAACCACGTCCTCTGTTCTGATGACAATCGTGTCACTCGAATCCAAATCGGCCGCCAAAATCTCCAAGGTATGCTCCCTTTAAATCTCCAAAATCTCACAGCTCTTGAGCGATTAGAGCTTCAATGGAACAAAATCTCTGGCCCTTTGCCGAGTTTGACTGGATTAACCTCTTTGCAAGTGCTTTTGCTTAGTGGGAATCAGTTCACTTCCATTCCGTCCGATTTCTTCGCCGGAATGACCTCTCTTCAGGCCGTTGAGATCGACGAAAACCCCTTTTCAGCTTGGGAGATTCCGGCCAGTCTACGAAATGCTTCTACGCTACAGAACTTCTCAGCCAACTCTGCGAATGTTACCGGTCGGATTCCGGAGTTTCTCGGCGGCGAGGACATTCCGGGGCTTACTAATTTGCATCTTGCTTTTAATAGTCTTGAAGGGGGTCTTCCTTCCAGCTTTTCTGGATCTCAATTGGAGTCTTTGTGGGTTAATGGACAAAAGAGCGCTGATAAACTTAGTGGGAGTATTGATGTTTTGCAGAACATGACTTCTTTGATTGAAGTTTGGTTGCATTCGAATTCATTTTCGGGTCCTTTACCAGATTTTTCGAGGTTAAAGGATTTGCAGGCGTTGAGTTTAAGAGATAACAAGTTTACTGGTCCTGTTCCAAGTTCTTTGGTAAATTCTCCATCGTTGAAAGTGGTGAATTTGACTAATAATCTGCTTCAGGGTCCAATTCCTCTGTTTAAAACAGGGGTTGTTGTGGATATGACTAATGATTCCAACAGTTTTTGTTTGCAAGATCCTGGGGAATGTGATTCACGAGTGAATACATTGCTTTCTATTGTGAAATTTATGGGTTATCCTCAAAGATTTGCAGAGAATTGGAAGGGAAATGATCCATGTGCTGAGTGGATTGGAATTTCTTGCAGGAATCAAAGCATAGCCATCGTAAACTTTCAGAAAATGGGACTTTCTGGTATTATTTCTCCTGAGTTTGCATCTCTTAAAAGGCTGGAAAGATTGGTTCTTGCTGATAATAATCTCACAGGTTCTATTCCTGAGGACCTTACAACTCTTCCTTTTCTAACTGAGTTGGATGTTTCGAATAATCAGCTTTCTGGGAAGATTCCTAAGTTTAGGAGTAATGTAATGATGACCATCACAGGTAACCCTGATATTGGGAAAGAAAAGACTGATTCTTCTTCTAATGGTACTTCACCGTCAGCAAGTTCGAATGACACGAAGGAAGCAGGGTCTAATGGTGGTGGAAACTCCGGAGATGGGGAGAAGAAACCTAGTTCCATGGTTGGAGTCATTGTTCTTTCTGTTGTTGGTGGTGTCTTTGTTCTGTTCTTGATTGGATTGGTGGTTTTGTGTGTGTATAAAATGAAGCAGAAACGATTTAGTCAGGTGCAAAGCCCAAACGCTATGGTTATTCATCCACGCCATTCGGGTTCCGATAATGAGAGTGTAAAGATCACAGTTGCTGGATCGAGTGTTAGGGTTGGTGCAATTAGTGAAACACAATATGGTGCTAGCAGTGAGACTGGTGATATTCAAATGGTTGAAGCTGGAAACATGGTGATTTCAATTCAGAACTCCTTTTCTGCAGTTACTGGTCGCGTAACGACTAAAGTTGATGTATTCAGCTTCGGTGTGATTCTAATGGAGCTAATCACCGGGAGAAAGGCTCTTGACGAGAGCCAGCCTGAGGAGAGCATGCACCTTGTAACTTGGTTCCGTCGGATGCAAATCAACAAGGACTCCTTTCACAAGGCTATTGATCCAACCATTGATCTTACCGAAGAAACGTTTGCCAGCATCAACACCGTGGCAGAGTTGGCAGGTCATTGTTGTGCTAGGGAGCCATATCAAAGGCCAGATATGGGTCATGCAGTCAATGTACTATCATCTCTTGTTGAGTTTTGGAAACCAACTGACCAGAACTCCGAAGATATATACGGCATTGACCTTGAGATGTCATTGCCTCAAGCTCTCAAGAAATGGCAGGCATATGAAGGTAGAAGTCAAATGGAATCGTCTTCATCGTCCCTCCTTCCTAGCTTCGACAACACTCAGACCAGCATACCAACAAGGCCTTACGGGTTTGCAGAATCTTTCACATCTGCAGATGGGAGATGA 2319 43.73 MEKKKTHFGNKHFLILAIFSIFHSVEPLELSPDAPAMTALKKSLNPTESLGWSDPNPCKWNHVLCSDDNRVTRIQIGRQNLQGMLPLNLQNLTALERLELQWNKISGPLPSLTGLTSLQVLLLSGNQFTSIPSDFFAGMTSLQAVEIDENPFSAWEIPASLRNASTLQNFSANSANVTGRIPEFLGGEDIPGLTNLHLAFNSLEGGLPSSFSGSQLESLWVNGQKSADKLSGSIDVLQNMTSLIEVWLHSNSFSGPLPDFSRLKDLQALSLRDNKFTGPVPSSLVNSPSLKVVNLTNNLLQGPIPLFKTGVVVDMTNDSNSFCLQDPGECDSRVNTLLSIVKFMGYPQRFAENWKGNDPCAEWIGISCRNQSIAIVNFQKMGLSGIISPEFASLKRLERLVLADNNLTGSIPEDLTTLPFLTELDVSNNQLSGKIPKFRSNVMMTITGNPDIGKEKTDSSSNGTSPSASSNDTKEAGSNGGGNSGDGEKKPSSMVGVIVLSVVGGVFVLFLIGLVVLCVYKMKQKRFSQVQSPNAMVIHPRHSGSDNESVKITVAGSSVRVGAISETQYGASSETGDIQMVEAGNMVISIQNSFSAVTGRVTTKVDVFSFGVILMELITGRKALDESQPEESMHLVTWFRRMQINKDSFHKAIDPTIDLTEETFASINTVAELAGHCCAREPYQRPDMGHAVNVLSSLVEFWKPTDQNSEDIYGIDLEMSLPQALKKWQAYEGRSQMESSSSSLLPSFDNTQTSIPTRPYGFAESFTSADGR* 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 4195316 4198647 - Chy9G161830.1 Chy09g00467 233364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00467 772 SUPERFAMILY L domain-like 53 441 - -
Chy09g00467 772 Gene3D Transferase(Phosphotransferase) domain 1 544 716 - -
Chy09g00467 772 Pfam Leucine rich repeat N-terminal domain 31 66 IPR013210 -
Chy09g00467 772 Pfam Leucine rich repeat N-terminal domain 334 368 IPR013210 -
Chy09g00467 772 PANTHER OSJNBA0070M12.3 PROTEIN 596 772 - -
Chy09g00467 772 MobiDBLite consensus disorder prediction 738 761 - -
Chy09g00467 772 PANTHER OSJNBA0070M12.3 PROTEIN 18 591 - -
Chy09g00467 772 MobiDBLite consensus disorder prediction 446 480 - -
Chy09g00467 772 ProSiteProfiles Leucine-rich repeat profile. 117 138 IPR001611 GO:0005515
Chy09g00467 772 SMART LRR_typ_2 394 418 IPR003591 -
Chy09g00467 772 SMART LRR_typ_2 92 114 IPR003591 -
Chy09g00467 772 SMART LRR_typ_2 115 138 IPR003591 -
Chy09g00467 772 SMART LRR_typ_2 190 213 IPR003591 -
Chy09g00467 772 MobiDBLite consensus disorder prediction 446 490 - -
Chy09g00467 772 PANTHER RECEPTOR PROTEIN KINASE TMK1 18 591 - -
Chy09g00467 772 Pfam Leucine Rich repeats (2 copies) 395 437 IPR025875 -
Chy09g00467 772 Gene3D Ribonuclease Inhibitor 331 456 IPR032675 -
Chy09g00467 772 MobiDBLite consensus disorder prediction 738 772 - -
Chy09g00467 772 SUPERFAMILY Protein kinase-like (PK-like) 598 710 IPR011009 -
Chy09g00467 772 Gene3D Ribonuclease Inhibitor 31 330 IPR032675 -
Chy09g00467 772 PANTHER RECEPTOR PROTEIN KINASE TMK1 596 772 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00467 - - K00924 csv:101211586 1079.7
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01862 Chy-Chr4:24816859 Chy09g00467 Chy-Chr9:4195316 6.80E-52 dispersed
Chy09g00467 Chy-Chr9:4195316 Chy09g00803 Chy-Chr9:10743617 0 dispersed
Chy09g00467 Chy-Chr9:4195316 Chy12g00659 Chy-Chr12:9466825 7.28E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g532 . . Bda01g01787 Bda11g00197 Bpe13g00997 . . . . Cmo18g00627 . . . . . . Cpe01g01857 . . . . . . . . . . . . . . . . . . . Csa05g01967 . . . . . Bda11g00197 . Bpe02g01964 Bma01g00495 Bma06g01141 . Cmo04g02234 Cmo15g00927 Cma04g02141 Cma15g00889 Car04g02076 Car15g00835 Cpe13g00428 . Bhi12g00963 . . . . . Lcy10g1596 Cla01g00653 . . . . . . Lsi09g00707 . Chy09g00467 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001831 2 2 1 2 3 1 4 1 1 2 2 1 4 2 1 4 1 1 4 1 2 2 2 2 2 2 2 3 2 1 60
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71463 PF12799 LRR_4 2.80E-06 CL0022 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00467 Chy_Chr09 FPKM 4.336158 4.564527 6.632959 6.645897 7.318346 5.368593 6.184736 6.42089 6.122019 6.432299