Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy09g00499 | ATGGCACTTGCAAATTCAGCTATACAAGAAGTTGATGGCATGGAGAAAAATGGCGGTGGATATTTGAAGAGTTTAGCCATTGGAAAAGGCCATGATCAGAATCCAAATGGTGACTTTGTGTTCCGAGACACCACGAATTATCAACTCGGTCAGCAGCAACAACAATCTCTCATCAACTTCGGTCATAAGATGAATAATGAATCTTTGTTGAGCTTTGAAGCACAAGGGATTTGTCAATTAGATCTCACTTATAATTGGGATGATCAGCAACGTGTGATGGAAGACCCTAATTGCTTTCAGACAGCTACAAATCATAATAATTATAGTCCTTCAAAAGATCATCATCACCATAATAAAAATGGAGATAATGGTTCTGTTTATGAGTGGCTTTATTCTGAATCAACAACTGATTTTTCTGATTCCATTCAAGAAGCTGAAGGAACTCAAGAGATTGTTCCCAATCACAAGCGATCCCATACTACGGGAGAGAGCAGTGGGAGTGTATGTAAGAAGCAATGTACTGCTGCACCTAAGAAACAGAAACCCAAATCAGCAACAGCCAAAGATCCACAAAGCATTGCAGCCAAGAATCGACGAGAAAGGATTAGCGAGAGGTTGAAGATACTCCAAGAATTGGTTCCCAATGGCTCTAAGGTTGATTTGGTAACCATGTTGGAGAAAGCAATTAGTTATGTCAAATTTCTTCAACTACAAGTGAAGATCCTAGCAACCGATGAATTTTGGCCAGTTCAAGGTGGGAAAGCTCCAGATATTTCACAAGTAAAGGAAGCCATTGATGTGATTCTTTCATCTCAAAGAGAAAGAAGCTCAAGCTCAAACACTGAAAAGTGA | 852 | 39.55 | MALANSAIQEVDGMEKNGGGYLKSLAIGKGHDQNPNGDFVFRDTTNYQLGQQQQQSLINFGHKMNNESLLSFEAQGICQLDLTYNWDDQQRVMEDPNCFQTATNHNNYSPSKDHHHHNKNGDNGSVYEWLYSESTTDFSDSIQEAEGTQEIVPNHKRSHTTGESSGSVCKKQCTAAPKKQKPKSATAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKILATDEFWPVQGGKAPDISQVKEAIDVILSSQRERSSSSNTEK* | 284 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 4851121 | 4853767 | - | Chy9G162150.1 | Chy09g00499 | 233396 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy09g00499 | 283 | MobiDBLite | consensus disorder prediction | 148 | 197 | - | - | |
| Chy09g00499 | 283 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 186 | 235 | IPR011598 | GO:0046983 | |
| Chy09g00499 | 283 | Pfam | Helix-loop-helix DNA-binding domain | 193 | 236 | IPR011598 | GO:0046983 | |
| Chy09g00499 | 283 | SMART | finulus | 192 | 241 | IPR011598 | GO:0046983 | |
| Chy09g00499 | 283 | CDD | bHLH_AtIND_like | 187 | 249 | - | - | |
| Chy09g00499 | 283 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 31 | 271 | - | - | |
| Chy09g00499 | 283 | Gene3D | - | 179 | 243 | IPR036638 | GO:0046983 | |
| Chy09g00499 | 283 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 31 | 271 | - | - | |
| Chy09g00499 | 283 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 186 | 244 | IPR036638 | GO:0046983 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy07g00184 | Chy-Chr7:1509735 | Chy09g00499 | Chy-Chr9:4851121 | 5.16E-26 | dispersed | |
| Chy07g01715 | Chy-Chr7:20896769 | Chy09g00499 | Chy-Chr9:4851121 | 3.48E-25 | dispersed | |
| Chy09g00499 | Chy-Chr9:4851121 | Chy02g02104 | Chy-Chr2:25359984 | 2.06E-18 | dispersed | |
| Chy09g00499 | Chy-Chr9:4851121 | Chy01g00128 | Chy-Chr1:848554 | 4.45E-26 | transposed | |
| Chy09g00499 | Chy-Chr9:4851121 | Chy03g01587 | Chy-Chr3:17898667 | 8.94E-26 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 18475 | PF00010 | HLH | 8.90E-08 | No_clan | Chy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy09g00499 | - | - | csv:101209438 | 539.265 |