Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00548 ATGGATTCCTTGCCTTCCCAAACTTTCTCTGTCGAAATCACCGACAACCATATTCATGCCGGCGCCGTTGCCGTTCCCGGAGCACAAACCTCTGAATGGCTACTCAATTCCCCCGACCCTCCAACTTTCTGGGAACAAATTGTCGGAGCCATCAACGAAAATGCCATTCCTCGAAGTTGCAGAAAGAACTCAAACAAAAAAGTTTCTTCTTCAAGCTCTGAAAAACAGAGCATTTTTAAAATCATAATTACCCTTTTGCAAAGAGTGTTCCCCATCCTTAAATTAGCTCGAAATTACAAAGCTTCCAAGTTCAAAAACGACCTCATGGCTGGTTTAACACTCGCCAGTCTCTGCATCCCTCAAAGTATTGGGTATGCTAATTTGGCGAAGCTTGATCCGCAGTTTGGTCTGTATACAAGTGTTGTTCCTCCTTTGATTTATGCATTTATGGGGAGTTCAAGAGAGATCGCAATTGGACCAGTGGCTGTGGTTTCATTGCTTCTTTCATCTATGCTTCAAGAAATTCAAGATCCTGTTGCTGATCCTGTTGCTTATAGACGGCTTGTTTTCACTGTCACTTTGTTTGCTGGGATTTTCCAAGCTTCATTTGGACTCTTGAGATTGGGTTTTCTTGTGGACTTTTTGTCTCATGCTGCCATTGTTGGGTTCATGGCTGGAGCTGCCATTCTCATTGGTCTTCAACAAATGAAAGGGTTGCTTGCAATCAGCAATTTCACTACCAAAACTGATGTGGTTTCTGTTTTGAAATCTGTTGTCAAATCTGTTCATCAGACATGGTACCCTTTGAACATTGTAATTGGCTGCTCCTTCCTAATCTTTCTCCTTGTAGCCAGGTTCATAGGGAGAAGGAATAAGAAGCTGTTTTGGGTGTCAGCTATTGCTCCTCTCATATCAGTAATTCTTTCAACTTTGATAGTGTTTGTTTCAAGAGCTGACAAACATGGAGTCAAGATCGTGAAGGAAGTGAAAGAAGGACTGAACCCAATTTCCATTCATCAGCTTCAATTGAATAGCACAACTGTTGGGTTAGCTGCGAAATCTGGCCTTATTGCTGCCCTTATAGCTCTCACAGAAGCTATTGCCGTAGGCCGATCGTTTGCCTCGATTAAAGGGTACAACATTGATGGGAACAAAGAGATGATAGCCATTGGATTCATGAACATAATAGGCTCTTTAACGTCTTGTTACATAGCGACCGGGTCATTCTCAAGAACTGCAGTGAATTATAGTGCTGGATGTGAAAGTGTATTGTCAAATATAGTGATGGCAATAACAGTGATGGTGACACTCCAATTTTTTACTCGGTTTTTATACTTCACTCCAATGGCAATTTTGGCATCAATAATTCTATCAGCTCTTCCTGGTCTCGTTGACATAAATGAAGCTGTGCATATATGGAAGGTTGACAAGCTTGACTTTCTTGCTTGTCTTGGAGCTTTCCTTGGTGTCTTGTTTCATTCTGTGGAATTTGGCCTTCTTGTCGCGGTTGGAATTTCATTTGCAAAGATATTGTTGATTTCAATAAGACCAGGGACTGAAGAGGTGGGAAGGCTTCCAAGGAGTGACATGTTTTGTAACATGAAGCAATTTCCCATGGCCACCAAAACTCAAGGATTCTCCATTATCAGAATTAACTCTGCCTTGCTTTGTTTTGCCAATGCCAGTTTCATTAGGGACAGGATAATGAGATTAGTAGAAGAAGATGAAGATGGTGATGATATTGAAGAAAAAACAATAAAAGATCAGCCTAAACAACTTGTTGTTGACATGTGCAATGTCATGAGTATCGATACATCAGGAATCATTGTTTTAGAGGAACTTCACAAAAGGTTGTTGTTACACGGCATACAACTAACAATAGCAAGTCCAAAATGGGAAGTGATCCACAAACTAAAAAAAACCAAGTTTGTTGAAAGAATTGAAGGAAGGGTTTTCCTATCGGTAGGTGAAGCTGTGGATTCTTGCATTGGAAATGCATCCAAATTTCCTTCTCCCTAA 2019 40.81 MDSLPSQTFSVEITDNHIHAGAVAVPGAQTSEWLLNSPDPPTFWEQIVGAINENAIPRSCRKNSNKKVSSSSSEKQSIFKIIITLLQRVFPILKLARNYKASKFKNDLMAGLTLASLCIPQSIGYANLAKLDPQFGLYTSVVPPLIYAFMGSSREIAIGPVAVVSLLLSSMLQEIQDPVADPVAYRRLVFTVTLFAGIFQASFGLLRLGFLVDFLSHAAIVGFMAGAAILIGLQQMKGLLAISNFTTKTDVVSVLKSVVKSVHQTWYPLNIVIGCSFLIFLLVARFIGRRNKKLFWVSAIAPLISVILSTLIVFVSRADKHGVKIVKEVKEGLNPISIHQLQLNSTTVGLAAKSGLIAALIALTEAIAVGRSFASIKGYNIDGNKEMIAIGFMNIIGSLTSCYIATGSFSRTAVNYSAGCESVLSNIVMAITVMVTLQFFTRFLYFTPMAILASIILSALPGLVDINEAVHIWKVDKLDFLACLGAFLGVLFHSVEFGLLVAVGISFAKILLISIRPGTEEVGRLPRSDMFCNMKQFPMATKTQGFSIIRINSALLCFANASFIRDRIMRLVEEDEDGDDIEEKTIKDQPKQLVVDMCNVMSIDTSGIIVLEELHKRLLLHGIQLTIASPKWEVIHKLKKTKFVERIEGRVFLSVGEAVDSCIGNASKFPSP* 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 5755717 5765375 - Chy9G162640.1 Chy09g00548 233445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00548 672 PANTHER SULFATE TRANSPORTER 2.2 28 666 IPR030315 GO:0008272|GO:0015116
Chy09g00548 672 ProSitePatterns SLC26A transporters signature. 133 154 IPR018045 GO:0008271|GO:0008272
Chy09g00548 672 SUPERFAMILY SpoIIaa-like 542 662 IPR036513 -
Chy09g00548 672 ProSiteProfiles STAS domain profile. 556 662 IPR002645 -
Chy09g00548 672 TIGRFAM sulP: sulfate permease 91 655 IPR001902 GO:0015301|GO:0016020|GO:0055085
Chy09g00548 672 Pfam Sulfate permease family 104 484 IPR011547 GO:0016021
Chy09g00548 672 Pfam STAS domain 539 658 IPR002645 -
Chy09g00548 672 CDD STAS_SulP_like_sulfate_transporter 537 653 - -
Chy09g00548 672 PANTHER SULFATE TRANSPORTER 28 666 IPR001902 GO:0015301|GO:0016020|GO:0055085
Chy09g00548 672 Gene3D STAS domain 517 664 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00548 Chy-Chr9:5755717 Chy09g00752 Chy-Chr9:9955777 2.36E-99 dispersed
Chy09g00548 Chy-Chr9:5755717 Chy09g00551 Chy-Chr9:5849473 0 proximal
Chy07g01316 Chy-Chr7:17804054 Chy09g00548 Chy-Chr9:5755717 0 transposed
Chy07g00704 Chy-Chr7:6877474 Chy09g00548 Chy-Chr9:5755717 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00548 K17469 - csv:101211892 1210.28