Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00609 ATGCAGCAAAGTTGGAAATTGAGTTGCATATCATCAAGTGAGAGCGCATGTTTGGAAGGTGATGAAGAAGGAGAAGAATCCATTTTCCTTTCACTCTCCCCTCCAGGCCAACGCACCTCATTCTCTTCCAAACAACAACAAACCATTTACCCTAATTCTTCTCTTCAAAACCCTAATAATAATAATAATCATGAAAATGGCGCCGCCGTCACCGTCGCAATGCACATTGGCCCTCCCCCGGCCCTCTCATCCTCCACCCCGGCTGCCGTCCGACCCCTTGACTACTGGATCCCTACGCCTGCCCAAATCCTGGTTGGTCCCACCCAGTTCTCTTGCTCTGTCTGCACTAAAACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGACATGGATCAGAGTACAGAAAAGGGCCAGAATCATTAAGAGGATCAAAGGCAGCATCATCAATGCTTAGAGTTCCATGCTATTGCTGTGCAGAAGGATGTAAGAACAATATAGAGCATCCAAGGTCAAGGCCATTGAAAGACTTTAGGACACTTCAGACACATTACAAGAGAAAGCATGGGGCAAAGCCATTCAGTTGTAGGAAATGTGGGAAGTCATTTGCTGTTAGAGGGGATTGGAGGACACATGAGAAGAACTGTGGAAAGCTTTGGTTTTGCATTTGTGGCTCTGATTTTAAACATAAAAGATCCCTTAAAGATCATGTTCGTGCCTTTGGAGATGGCCATGCACCTCATACTGTTCAACTTTGTGAAGTTGAAGATGATAATGACGATGATGATTGGGAGTCGGATCATCATCATCATCATCAATATCTAAATGGATCACCTCAAACCTGGTCTATTTATCATTAA 864 44.44 MQQSWKLSCISSSESACLEGDEEGEESIFLSLSPPGQRTSFSSKQQQTIYPNSSLQNPNNNNNHENGAAVTVAMHIGPPPALSSSTPAAVRPLDYWIPTPAQILVGPTQFSCSVCTKTFNRYNNMQMHMWGHGSEYRKGPESLRGSKAASSMLRVPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFSCRKCGKSFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVQLCEVEDDNDDDDWESDHHHHHQYLNGSPQTWSIYH* 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 7432797 7433739 - Chy9G163250.1 Chy09g00609 233506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00609 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Chy09g00609 287 SUPERFAMILY beta-beta-alpha zinc fingers 106 133 IPR036236 -
Chy09g00609 287 MobiDBLite consensus disorder prediction 33 63 - -
Chy09g00609 287 Gene3D Classic Zinc Finger 109 132 - -
Chy09g00609 287 Pfam Zinc finger, C2H2 type 110 129 IPR013087 -
Chy09g00609 287 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Chy09g00609 287 PANTHER ZINC FINGER PROTEIN WIP6 1 270 - -
Chy09g00609 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 215 IPR013087 -
Chy09g00609 287 SMART c2h2final6 195 215 IPR013087 -
Chy09g00609 287 SMART c2h2final6 110 132 IPR013087 -
Chy09g00609 287 SMART c2h2final6 158 190 IPR013087 -
Chy09g00609 287 SUPERFAMILY beta-beta-alpha zinc fingers 178 215 IPR036236 -
Chy09g00609 287 Gene3D Classic Zinc Finger 193 265 - -
Chy09g00609 287 PANTHER ZINC FINGER PROTEIN WIP2 1 270 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00609 Chy-Chr9:7432797 Chy12g00708 Chy-Chr12:10521894 5.58E-98 dispersed
Chy09g00609 Chy-Chr9:7432797 Chy05g00122 Chy-Chr5:942824 6.01E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18479 PF00096 zf-C2H2 0.0093 CL0361 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00609 - - csv:101216722 565.074