Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00649 ATGGCCGCCGTTGCTGCAGCAGCAGGTGGGGTTAGTGTAGGAGTGACCAACCTCCAACTGCACCATTTGAAACAACCCAATTCGCCATTTCTCGGGAAGAAGCTCAGGTTTAAGCACAAATCGCCCTATCTCTGGACAGTTTCCGTTCAGAATCCCAGAAATGTACTGGTTTCGGCTCTGGGCGCTGACATGATCCATGTGGTTCATAATCTCTTTGTGGGTGTGGGTGTGGGGCTTCCTTGTACGGTGATGGAGTGCGGTGATATCATATATAGGAGCACTTTGCCCAAGTCTAATGGCTTAACCCTCACAATCCCTGGTGCCATTCTGGCTTTGGGTACTCTTTCTTATCTCTGGGCCACTCCTGGGGTGGCTCCTGGCTTCTTTGACATGTTTATTCTTGCATTCGTTGAGAGGATCTTTAGACCCACTTTCAGAAAGGACGATTTTGTTTTGGGAAAGAAGTTGGGAGAAGGAGCATTTGGTGTGGTCTATAGAGTGTCGCTGGCTAAAAACCCTTCAGAGAAGAAGGAAGGTGACCTTGTTTTGAAAAAGGCTACTGAGTATGGTGCAGTTGAAATTTGGATGAATGAGCGAGTGCGGCGTGCTTGTGCTAATAGCTGTGCAGACTTTATTTATGGCTTCCTTGAGAATTCTTCAAAGAAAGGAGATGGTGAATATTGGCTCATATGGAAGTTTGAAGGGGAAGCTACATTGGCCGATTTAATGCAAAGCAAAGAGTTTCCCTACAATGTAGAGAGGATGATTCTCGGCGAGGGGCAGCAGTTGTCCAAAGGGTTGGAAAGGGAGAATAGAATCATTCAGACAATTATGCGGCAGCTCTTATTTGCACTGGATAGTCTTCACTCAACTGGGATTGTGCATAGGGATATCAAGCCACAGAATGTCATTTTCTCTGAAGGATCTCGCACTTTCAAAATCATTGATCTTGGAGCTGCTGCTGATTTGCGAGTTGGCATTAACTATATTCCAAAGGAGTTTCTTTTGGACCCGAGATATGCTGCCCCAGAGCAATACATCATGAGCACACAAACTCCATCTGCTCCCTCAGCTCCTGTGGCAACTGCACTTTCCCCAGTCCTATGGCAGATGAACCTCCCAGATAGATTTGATATCTACAGTGCCGGTCTCATCTTCCTACAGATGGCATTTCCAGCAATGCGGACAGACAGTGGCCTAATACAATTCAACCGTCAGTTGAAACGATGTGACTACGACTTAGTTGCCTGGAGGAAAACTGTAGAGCCTCGTGCTAGTTCTGACCTGAGGAAGGGCTTTGAATTGTTGGATTTAGATGAAGGAATAGGATGGGAACTCCTTACATCAATGGTTCGATACAAAGCAAGGCAAAGAACGAGCGCTAAAGCAGCTTTAGCTCACCCGTATTTTAACAGGGAAGGTTTATTAGCTTTGTCCTTGGTGCAGAAACTGAGGCTGCAATTCTTTCGAGCTACACAACAGGACTACACTGAAGCTGCTAATTGGGTGATTCAGCTAATGGCAAAATCAGGAACCGAGAAGGATGGAGGGTTCACTGAAGCTCAGCTTCTGGAGCTCAAAGAAATGGAGCCGAAGAAGAAAGCAAATGTCGAAAGAAATGCTTTGGCCTCGATACTTAAGCTGCAACGGAAGATCTTAAAAACGTTAAATGAAAGCATGGATGAGCTAAGTCGACGAGGGAAGAGCCTGTGGTGGAGTAGATGGATTCCCAGAGAGGAATGA 1743 46.13 MAAVAAAAGGVSVGVTNLQLHHLKQPNSPFLGKKLRFKHKSPYLWTVSVQNPRNVLVSALGADMIHVVHNLFVGVGVGLPCTVMECGDIIYRSTLPKSNGLTLTIPGAILALGTLSYLWATPGVAPGFFDMFILAFVERIFRPTFRKDDFVLGKKLGEGAFGVVYRVSLAKNPSEKKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFIYGFLENSSKKGDGEYWLIWKFEGEATLADLMQSKEFPYNVERMILGEGQQLSKGLERENRIIQTIMRQLLFALDSLHSTGIVHRDIKPQNVIFSEGSRTFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQMNLPDRFDIYSAGLIFLQMAFPAMRTDSGLIQFNRQLKRCDYDLVAWRKTVEPRASSDLRKGFELLDLDEGIGWELLTSMVRYKARQRTSAKAALAHPYFNREGLLALSLVQKLRLQFFRATQQDYTEAANWVIQLMAKSGTEKDGGFTEAQLLELKEMEPKKKANVERNALASILKLQRKILKTLNESMDELSRRGKSLWWSRWIPREE* 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8371187 8377165 - Chy9G163650.1 Chy09g00649 233546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00649 580 SUPERFAMILY Protein kinase-like (PK-like) 134 472 IPR011009 -
Chy09g00649 580 ProSitePatterns Serine/Threonine protein kinases active-site signature. 293 305 IPR008271 GO:0004672|GO:0006468
Chy09g00649 580 Coils Coil 546 566 - -
Chy09g00649 580 Gene3D Phosphorylase Kinase; domain 1 137 232 - -
Chy09g00649 580 ProSitePatterns Protein kinases ATP-binding region signature. 156 184 IPR017441 GO:0005524
Chy09g00649 580 SMART serkin_6 150 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy09g00649 580 Gene3D Transferase(Phosphotransferase) domain 1 254 474 - -
Chy09g00649 580 CDD STKc_SNT7_plant 154 470 - -
Chy09g00649 580 ProSiteProfiles Protein kinase domain profile. 150 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy09g00649 580 Pfam Protein kinase domain 152 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy09g00649 580 PANTHER SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC 1 580 - -
Chy09g00649 580 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 580 IPR044803 GO:0004674|GO:0009579
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00649 - - - csv:101207504 1112.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00006 Chy-Chr4:75373 Chy09g00649 Chy-Chr9:8371187 3.65E-07 dispersed
Chy06g01226 Chy-Chr6:11125670 Chy09g00649 Chy-Chr9:8371187 1.93E-10 dispersed
Chy08g00569 Chy-Chr8:13259509 Chy09g00649 Chy-Chr9:8371187 1.07E-100 dispersed
Chy09g00649 Chy-Chr9:8371187 Chy08g00540 Chy-Chr8:12919239 5.53E-14 dispersed
Chy09g00649 Chy-Chr9:8371187 Chy06g00525 Chy-Chr6:3562906 1.33E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g179 Blo01g00433 . Bda01g02145 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe02g02334 . . . . . . . . Car15g01288 . . . . . . . . . . . . . . . . . . Chy09g00649 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010559 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71467 PF00069 Pkinase 3.70E-22 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00649 Chy_Chr09 FPKM 9.093081 12.057087 8.738309 13.978599 49.68029 40.432468 50.948246 0.986994 0.422208 0.401