Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00662 ATGTCAGCAGCTTCAAGGGGTAGAGTAACCATTACACTCGGCCGTAGCGGACAGGTAGTAAAAAAGGCCGGCCCAGGGACTGATGTTTCCGTCTCTGATTCTTGGCCTGTATCTGGAACCAAGCGGTCTGTAAGAGATAGGTTGGGAAGTAGCTCTGATAGTGATCTGTTATATGGAAGCCAACTCAATAACAAACGATTTCGAGGAGATGATGGGATGTCGAATTGGAGTTCTAATGGCGGGTTAGATGTGCCACATATTGGTAAAGACGACCTTCGGTATAAACTCTTGCAAAAAGGTGCATTCAAACGTGCTCAAAGCGATAATAAGAAGTGTTTAGATCTTCGGGAGAAGCTACCTAAGGCAGATCAAGTTCCTATACAACATCGTAATTCACCATTGCACAATACAAATATCTTACACCGAACCCCTTCAACCAGAAGTGCAGATGACCTACCTCAGAAGGAATCGTTAGGCAGTTCTTATTCCCCATGGACCATGGATAATTTAAGACAAAGATCACCTGCTAGAATTGTAGAATCATCGAGGCACTACTCTCTACAAAGAGATGATGAGAAACTTCAGAGAAGGCCAGCTAACCTGTCATTTGAGAATGCAAGATCAGTGGGGTATGTAGCCAAAGATGTTCACAATACTTCAGGTTCTGTTAGTACTGCAACGTATGTGACGAACTCTCTATTGCCCCCTACATCTGCAAAGCCAGTGGCACCGATTGTACCTTTACATCTTCCCCCAAGCGGAATTGCACACAAAACTCTCTATCCCGGCGACGAACTTCAAACTATAGATGGCTTGTTGCAGTCTCTAGGATTGGGAAAATATTCCATTCTTTTTAAGGCCGAGGAAGTTGATATGACTGCCTTGAAGCAAATGGGGGAGAATGATCTCAAAGAGCTTGGAATACCTATGGGTTTATTTGATCTTAAAGTTTTTGTTGATTGA 963 43.41 MSAASRGRVTITLGRSGQVVKKAGPGTDVSVSDSWPVSGTKRSVRDRLGSSSDSDLLYGSQLNNKRFRGDDGMSNWSSNGGLDVPHIGKDDLRYKLLQKGAFKRAQSDNKKCLDLREKLPKADQVPIQHRNSPLHNTNILHRTPSTRSADDLPQKESLGSSYSPWTMDNLRQRSPARIVESSRHYSLQRDDEKLQRRPANLSFENARSVGYVAKDVHNTSGSVSTATYVTNSLLPPTSAKPVAPIVPLHLPPSGIAHKTLYPGDELQTIDGLLQSLGLGKYSILFKAEEVDMTALKQMGENDLKELGIPMGLFDLKVFVD* 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8657806 8661416 - Chy9G163780.1 Chy09g00662 233559

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00662 320 ProSiteProfiles SAM domain profile. 264 308 IPR001660 GO:0005515
Chy09g00662 320 MobiDBLite consensus disorder prediction 129 169 - -
Chy09g00662 320 PANTHER PA-PL1 PHOSPHOLIPASE FAMILY 1 310 - -
Chy09g00662 320 MobiDBLite consensus disorder prediction 22 55 - -
Chy09g00662 320 Gene3D - 265 312 IPR013761 -
Chy09g00662 320 SUPERFAMILY SAM/Pointed domain 266 308 IPR013761 -
Chy09g00662 320 PANTHER OSJNBA0060P14.15 PROTEIN 1 310 - -
Chy09g00662 320 MobiDBLite consensus disorder prediction 128 169 - -
Chy09g00662 320 MobiDBLite consensus disorder prediction 174 193 - -
Chy09g00662 320 Pfam SAM domain (Sterile alpha motif) 268 308 IPR001660 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00662 - - - csv:101207992 585.874
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01377 Chy-Chr1:18608625 Chy09g00662 Chy-Chr9:8657806 9.24E-14 dispersed
Chy09g00311 Chy-Chr9:2665945 Chy09g00662 Chy-Chr9:8657806 1.19E-35 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g789 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0641 . . . . . . . Bda07g01570 . Bpe11g01738 . . . . Cmo04g02857 . . . . . Cpe13g00922 Cpe07g00639 . . . . . . . . . . . . . . . Csa05g01723 Chy09g00662 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004993 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 5 3 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00662 Chy_Chr09 FPKM 0.971132 1.417581 0.992273 1.414791 3.027783 3.205801 3.245246 1.740805 1.562887 2.262607