Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00665 ATGGCGATTCCCGCCATTAACGTCTACTCCATCATTTCTCTTCAACATCTCTGCCCCCCGCCGTTATCTTATCCTTTCCCCTCCTTCCTAACCCCTCACTATTCTTCACATCCCATTCACGCCTCCCGGTTTTGCCCCCACAAACCTCTCGTCTACTACTCTACCCGTCCAGTTCTATTTCAGCCTTCCTTTCACTCTCCGAGGTCCATTTTCTCTAAAAAATCCCAACTCTCCGATGTTGACGAAGACGAGGATGAAGACGACGACGAAGACGAAGACGACGACGAAGACGACGTGGCAGCCGAGGAGTACGACAGCGATGCATTGGGAGGATTGGAGCAAAGCTACGATGAAGTGGAATTGTCGATGGACACTTCAGAAATTTCTAATGCATCCCAGGAGTTCAAATGGCAGAGAGTGGAAAAGCTTCTCGGTGAAGTTAGAGAGTTTGGAGAAGGAATTATCGATGTCGATGAGCTTGCTTCAGTTTATAATTTCCGCATCGATAAGTTTCAGCGGCTAGCCGTACAAGCATTCTTGAGAGGATCATCGATAGTGGTATCGGCTCCTACCAGCAGTGGAAAGACTTTGATTGCTGAGGCTGCGGCCGTTGCCACCGTAGCTAGGAAGAGACGATTGTTTTACACGACTCCACTGAAAGCATTGTCGAATCAGAAATTTCGCGAGTTTCGTGAGACGTTTGGAGACAGCAACGTTGGGCTTCTAACTGGTGATTCTGCCGTTAATAAAGATGCACCGGTTTTAATCATGACTACAGAAATTTTGCGCAACATGTTGTATCAGAGTGTTGGAATGGCCACATCTGCTAGTGGACTATTTCATGTGGATGTGATTGTTTTGGATGAAGTTCATTACCTTAGTGATATTTCTCGGGGCACAGTGTGGGAAGAGATTGTTATTTATTGCCCAAAAGAAGTTCAGCTTATTTGTCTCTCAGCAACGGTTGCAAATCCAGATGAGCTGGCTGGTTGGATCGGTCAGATTCATGGGAAAACTGAGTTAGTAACATCATCAAAGCGTCCAGTACCATTGACTTGGCATTTCTCTACGAAGACCTCTTTACTTCCTCTCCTTGATGAGAAAGGAGCGCGCATGAATAGGAAGCTGTCGCTCAATTATCTTCAGCTTAATGCTTCAGGAGATAAATTTTCTAAGGATGATGGATCAAGAAGAAGAACCCCAAAAAGGCGTGGGAATGATATCAGCTATGACAATATTGGCAGCATGTCTAGACAAGCTACACTTTCAAAGAATGATATAAACTCAATCCGCCGTTCAAATGTTCCTCAGGTGATCGATACATTGTGGCAACTTAAGTCAAAAGATATGCTGCCTGCAGTTTGGTTTATATTTAGCAGGAAAGGATGTGATGCAGCTGTTCAGTACATCGATAGCAGCAATCTCTTAGATGATTGTGAGAGGAGTGAAGTTGAACTTGCGTTGAGGAAATTCCGTATTCAATTTCCAGATGCTGTCCGGGAATCGGCTATCAAAGGACTTCTGCAAGGAGTTGCTGCACATCACGCTGGCTGCCTGCCTCTCTGGAAGTCATTCATTGAAGAGCTGTTTCAGAGGGGACTTGTGAAGGTCGTCTTTGCAACAGAAACATTAGCTGCTGGAATCAACATGCCAGCTAGGACAGCAGTTATTGCATCCCTGAGTAAAAGAAGCAATAATGGTCGCACCCAGTTAAGCCCCAATGAACTGCTTCAAATGGCTGGGCGTGCTGGACGTCGAGGCATTGATAAAAAAGGTCATGTGGTGCTTCTTCAAACTCCATATGAAGGTGCTGAAGAATGCTGCAAGCTCCTATTTGCTGGCATTGAACCACTTGTTTCTCAGTTTACGGCTTCATATGGAATGGTACTGAATCTTCTCGCAGGTGCAAAGGTTACTCATACGAGTGAAATGGACGAGACAAAAGCTTTCCAAGCTTGGCGAACGCTAGAAGAAGCTAGGAAGTTAGTTGAACAAAGTTTTGGAAACTATGTTGGGAGCAACGTCATGCTTGCAGCAAAGGAGGAGCTTGTCAAAATAGAAAAAGAGATTGAAATGCTCAATTTAGAAATAACTGATGAAGCCATTGATAGAAAAAGCAGGAAGTTCTTGTCAGACATGGCATATAATGAGATAGCAGAGCTGCAGGAGGAACTACGATTAGAGAAACTTCACAGGACAGAACTGCGAAAAGAGATGGAATCACAAAGAATTTGTGCCCTCAATTCTCTGTTACGAAATTTAGGAGATGGACATTTGCCCTTTTTGTGTTTGCAATACAAAGATTCTGAAGGAGTCCAACATTCAATTCCTACAGTTCTCCTTGGAAACATGGACTCATCAAAACTTGGTAACATGTTTCCTGCTGATAGTTCTTTGAATGGTGCAGAATCAAATCTTGGTATCACCTTGGAGCCGGGTGCTGAATCATCTTATTATGTGGCACTAGGTTCAGATAACTCGTGGTACCTATTTACTGAGAAATGGATCAAAACAGTTTATAAAACTGGCTTTCCTAATGTTGCTTTATCTAAAGAGGATGCTTTACCTCGAGAGATTATGAGGAGTCTTCTTGATAAAGAGGGAATGAAGTGGGAGAAGCTTGCTGATTCTGAGCTTGGCAGTTTAGCATATATGGAAGGATCTCTAGAAACATGGTCATGGAGTTTAAACGTGCCAGTTCTGAATAGTCTTTCCGAAAATGACGAACTCTTGCAAATGTCTCAATCGTACATGGAGTCTTTAGAAAGGTACAAGGTGCAAAGAAATAAAGTTGCACGATTGAAGAAAAGGATTTCTAAAACAGAAGGATTCAGAGAGTACAAGAAGATTTTAGATATGGCCAATCTTATAGAGGACAAGATTAGACAATTAAAGACTAGATATAAACGGCTAAGTAATCGAATTCAGCAAATCGAACCATCAGGGTGGAAAGAGTTTTTGCAGATCAGCAATGTGATACATGAAATCAGAGCACTTGATATAAATACTCATGTTATGTTTCCACTTGGAGAAACCGCAGCTGCTATACGAGGTGAAAATGAGCTGTGGATTGCCATGGTTCTAAGAAACAAATTCTTAGTACAACTAAAGCCTACGGAGCTTGCTGCTGTTTGTGCAAGTTTAGTTTCTGAAGGCATCAAAGTTCGACCTGGAAGGAATAACAGTTACATATTCGAACCATCAAGAACAGTAATCAATATGATCAATTTTCTAGAAGAGCAGAGGAATTCTCTAGAAGATCTTCAAGAAAAGCATGGAGTGAACATATCATGCTGTTTGGACAACCAATTTTCAGGAATGGTTGAGGCTTGGGCATCTGGGTTGACTTGGAGAGAGATAATGATGGATTGTGCAATGGATGAGGGAGATCTGGCACGCCTCTTGCGACGAACAATCGACTTGTTGGCTCAGATTCCAAAATTGCCTGATATCGATCCATCTTTGCAACGCAATGCATCCACTGCTTCTGATGTCATGAATCGTCCACCTATAAGCGAATTGGCTGGATAA 3531 42.82 MAIPAINVYSIISLQHLCPPPLSYPFPSFLTPHYSSHPIHASRFCPHKPLVYYSTRPVLFQPSFHSPRSIFSKKSQLSDVDEDEDEDDDEDEDDDEDDVAAEEYDSDALGGLEQSYDEVELSMDTSEISNASQEFKWQRVEKLLGEVREFGEGIIDVDELASVYNFRIDKFQRLAVQAFLRGSSIVVSAPTSSGKTLIAEAAAVATVARKRRLFYTTPLKALSNQKFREFRETFGDSNVGLLTGDSAVNKDAPVLIMTTEILRNMLYQSVGMATSASGLFHVDVIVLDEVHYLSDISRGTVWEEIVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSSKRPVPLTWHFSTKTSLLPLLDEKGARMNRKLSLNYLQLNASGDKFSKDDGSRRRTPKRRGNDISYDNIGSMSRQATLSKNDINSIRRSNVPQVIDTLWQLKSKDMLPAVWFIFSRKGCDAAVQYIDSSNLLDDCERSEVELALRKFRIQFPDAVRESAIKGLLQGVAAHHAGCLPLWKSFIEELFQRGLVKVVFATETLAAGINMPARTAVIASLSKRSNNGRTQLSPNELLQMAGRAGRRGIDKKGHVVLLQTPYEGAEECCKLLFAGIEPLVSQFTASYGMVLNLLAGAKVTHTSEMDETKAFQAWRTLEEARKLVEQSFGNYVGSNVMLAAKEELVKIEKEIEMLNLEITDEAIDRKSRKFLSDMAYNEIAELQEELRLEKLHRTELRKEMESQRICALNSLLRNLGDGHLPFLCLQYKDSEGVQHSIPTVLLGNMDSSKLGNMFPADSSLNGAESNLGITLEPGAESSYYVALGSDNSWYLFTEKWIKTVYKTGFPNVALSKEDALPREIMRSLLDKEGMKWEKLADSELGSLAYMEGSLETWSWSLNVPVLNSLSENDELLQMSQSYMESLERYKVQRNKVARLKKRISKTEGFREYKKILDMANLIEDKIRQLKTRYKRLSNRIQQIEPSGWKEFLQISNVIHEIRALDINTHVMFPLGETAAAIRGENELWIAMVLRNKFLVQLKPTELAAVCASLVSEGIKVRPGRNNSYIFEPSRTVINMINFLEEQRNSLEDLQEKHGVNISCCLDNQFSGMVEAWASGLTWREIMMDCAMDEGDLARLLRRTIDLLAQIPKLPDIDPSLQRNASTASDVMNRPPISELAG* 1177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8705323 8722064 + Chy9G163810.1 Chy09g00665 233562

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00665 1176 MobiDBLite consensus disorder prediction 390 406 - -
Chy09g00665 1176 MobiDBLite consensus disorder prediction 1153 1176 - -
Chy09g00665 1176 Coils Coil 954 974 - -
Chy09g00665 1176 Gene3D - 950 1168 - -
Chy09g00665 1176 SMART DSHCT_2 1001 1175 IPR012961 -
Chy09g00665 1176 SMART helicmild6 501 587 IPR001650 -
Chy09g00665 1176 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 434 633 IPR001650 -
Chy09g00665 1176 MobiDBLite consensus disorder prediction 80 104 - -
Chy09g00665 1176 Pfam DSHCT (NUC185) domain 1006 1171 IPR012961 -
Chy09g00665 1176 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH15 CHLOROPLASTIC 50 1172 - -
Chy09g00665 1176 PANTHER ATP-DEPENDENT RNA AND DNA HELICASE 50 1172 - -
Chy09g00665 1176 Coils Coil 676 696 - -
Chy09g00665 1176 SMART ultradead3 164 354 IPR014001 -
Chy09g00665 1176 Gene3D - 128 347 IPR027417 -
Chy09g00665 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 600 IPR027417 -
Chy09g00665 1176 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 176 340 IPR014001 -
Chy09g00665 1176 MobiDBLite consensus disorder prediction 74 107 - -
Chy09g00665 1176 MobiDBLite consensus disorder prediction 389 408 - -
Chy09g00665 1176 CDD SF2_C_Ski2 431 599 - -
Chy09g00665 1176 Coils Coil 718 738 - -
Chy09g00665 1176 Gene3D - 348 618 IPR027417 -
Chy09g00665 1176 Pfam DEAD/DEAH box helicase 171 323 IPR011545 GO:0003676|GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00665 K26077 ISE2, EMB25; ATP-dependent RNA helicase ISE2 [EC:3.6.4.13] - csv:101218385 2200.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00665 Chy-Chr9:8705323 Chy12g00260 Chy-Chr12:2911428 8.76E-77 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g801 . Blo16g01143 . Bda11g01247 Bpe13g01442 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1006 Cone19ag1000 . . . . . . . . Bda07g01543 Bda11g01247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01726 Chy09g00665 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012724 1 1 1 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00665 Chy_Chr09 FPKM 0.891667 0.0 0.0 0.0 4.079749 0.0 4.743375 0.0 0.0 0.0