Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00667 ATGAAGAGGTCTAGAGAAGATGTAAACATGGAATCACAGCTCCAGCGTCCTGTATTTTCCTCTAGAGGAGAATCAACTGTGCAGAGCCAGATGGTAGGAGGTGGGAGTTTGCAAAAACTAACGACGAATGATGCCCTAGAATATCTTAAGAATGTGAAGGACATCTTCCGAGACAAGAAGGAAAAATATGAAGATTTTCTTGAAGTCATGAAAGAATTCAAGGCCCAAAGAATTGATACTGTCGGTGTCATAGCAAGAGTGAAGCAGCTATTTAAAGGTCATCGTGACCTGATTTTGGGCTTTAATACGTTTTTGCCAAAAGGATATGCAATAACTTGTCCTCTCGAGGATGAAACACCTCCTCAAAAAAAGAAGCCTGTTCAATTTGAAGAAGCCATCAACTTCGTCGGTAAGATTAAGACACGGTTTGAAGGTGATAACCATGTATACAAGTCATTTTTAGAAATTTTGAATTTGTACAGGAAGGAAAACAAGTCTATAAGTGAGGTCTACCGGGAGGTTTCTGCACTGCTGCAAGACCACCCAGACCTTCTTAGGGAGTTTGTTCATTTTCTGCCTGATGCTTCAGCCACAACCTCAAATAATCACGTGTCATCTATGAGGAATTCTGTCCTTCGTGATAGAAATTCTTCCATACCACCTATTCAACACAAGGAGAGGGCAATGACTCCACATGCTGACCATGACATTGGTGTCAATCATCCTGATTGTGACCATGCTAGAGTTACTATCAAAGGCGATAAAGAGAAATGTCAGCACAGCGAAAAAGAGAAGGATAGGAGAGACAACACAGATAGTATGGAACAGTGTAGGGAAATTGATAAAAAATTTATCGAGCATGATAGCAGTAAGGACATCAGCATGCAAAGTTTTCCACAGAAGAGGAAATCTTCTGTTAGAGTCGAAGATACGACTTCAGTGAAATGGCATCTAAGTGGGGAAGGTATGTCTTTTATTGAGAAGGTAAGGCAGAAGTTACCAAATGTTGATGTTTACCAAGAATTTGTGAAGTGTCTCGACATATTCGACAAGGAAATAATCACTCGATCAGAACTGCATTCTTTGGTGAGAGATTTACTTGGAAGATATCCAGACCTTATGGATGCTTTTGGTGAATTTATGATACTTTGTGACAGAACTGATGGGCTTCTAGCAGATATCATGAGTAAAAAATCCTTGTGGAATGAAGGTAGTTTACCAAGATTAGCGAAGGTAGAGGAGAAGGACAGAAATCGAGATCATGAAAGGGAGGATGGTTTTAAAGACCGTGACCATGGAAATCGAGAAAGGGATAATAGACTTGAAAAAAGTGTTGCTTTTGGCCATAATGATGTTGGTAGCCACAAGATGTCTTTATTTTCTAGTAAGGACAAATATTTTGGGAAACCTATCAATGAACTTGACCTCTCTAACTGTGAGCGGTGTACTCCCAGTTACCGTCTTCTCCCAAAGAATTATCCAATACCCTTTGCTAGTCAGAGAACAGAAATTGGTGATCAAGTTTTAAATGATCATTGGGTTTCTGTCACTTCAGGAAGTGAGGATTACTCTTTTAAGCACATGCGCAAAAATCAGTATGAAGAAAGCCTCTTTCGTTGTGAGGATGACAGGTTTGAATTGGATATGTTGTTAGAGTCTGTTAATGTAACATCCAAGCGGGTTGAAGACTTATTAGAAAAAATCAACTTGTCAGACAGTCCAGTCCATATTGAAGATCATTTAACAGCACTTAATTTGAGATGCATTGAACGCTTATATGGTGATCATGGCCTTGATGTGATGGATGTGTTAAGGAAGAATGCTCCACTTTCACTCCCTGTTATATTAACCCGCTTGAAGCAAAAACAAGAAGAGTGGGCACGGTGTCGATCCGATTTTAATAAAGTTTGGGCTGAAATATATTTCAAAAATTATCAGAAATCACTTGATCATCGTAGCTTCTATTTCAAGCAGCAGGATACAAAAAGCTTAAGCACAAAAGCTTTGTTATCAGAGATCAAGGAAATTAATGAAAAGAAGCATAAAGAAGAGGATGTACTGCTCACTATTACTGCAGAAAATAAACGACCTATAATTCCAAATTTGGAATTTGACTACCCTGATCAAGATATTCATGAAGATCTCTATCATCTAATTAAATATTCCTGTAGAGAACTATGCTCCACAGATCAGTCTGATAAAGCTATGAAAATTTGGACAACCTTCCTGGAGCCCATGCTTGGTATTGCTTCACGGCCCTTGAGTTCCGAGGTTTCCAAAGAAATCATTAGAGAAAATAATTTTGCAGTTAGAGGTACTGCAATTGGTATGGTAGGGGTTAGTAGTAGCCATACTGTTGGAGGTGATGAGTCTAAGCTGCGAGATCCTCCCAGAAATGAAGTAGGAGGCGTTCAACCTAAACAATCAAGCCCTTGCAGGGTTTGGCCCATGAATGGAGATTCTTGTATTGAAGAAAATAGTTTTCACAAAGCAAATCGTGTTGACAGCAAGGTTGATAGTCTCTGTAAATTGCAGTTCAACGAAAATCAAGACGATTCTAATGAGAGGTTGGTAAAATCCAATGTGTTGGTTAGCGCTGTGCTCGAACAAGGGAAGGGGAAAGTAACTGTAGAAACTGCATCAGGGCTGCGCTCTACTGCATCCAGAACTTGGAACGGTAGTGTTGATAAAGGGCTTGAGTTAGCATCATCACAGGATGGTTGTTCATCAAGGCCACTTTTATCCAATGGTGTGATGGCAGAAGGCTCAAATGCTCCTAGTTTCAATGAAAAATGTGATGGGCACTCAAAGATAGAGAGAGAAGAGGGTGAACTATCACCGACTGGAGAATTAGAAGATAACTTTTCAAATTATCAAGAAGGTAGTCTTGATAAAGCAAAAGACAGTGCCGCAGGCAGGCAATGTTTCAGAGCGCATGCAGATAAGATATCTTGCAGGGATGTGACAAGAGAAACTCATATAGATGCTGATGATGAAGGGGAGGAAAGTGCTCGGCGGTCGTCAGAAGACAGCGAAAATGGTTCTGAGAATTGTGATATCTCTGGAACTGAGTCTATTGATGGAGAGGACAGTACTCATGAAGGGCAGGAAGACAGGGGTCATAATGACCATCATAGTAAAGTTGAGAGTGAAGGGGAGGCTGAAGGAATGGATGATGCCCATAGTGCTGAGGGTGATGGAACAGTGTTACCCTTTTCGGAACGTTTTCTTCTCAATGTGAAGCCGCTTGCTAAGTATATCCCATTGGCATTACGGGATGATAAAAAGAACTCCCGGATTTTTTATGGAAATGACTCCTTTTATGTTCTTTTTAGACTTCACCGAACATTGTATGAGCGGATACGATCAGCAAAGATTAATTCATCATTTGGTGAGAGGAAGTGGAGAGCTTCAAATGATACTAGCCCGAACGATCTGTATTCCAGATTTATGAGTGCACTTCGTAGTTTACTTGATGGCTCCTCTGATAATATGAAGTTTGAGGATGACTGCCGATCTATTATTGGAACCCAGTCTTATGTTCTATTCACTTTGGACAAGTTGATTTATAAACTCGTTAAACAGCTTCAAACAGTTGCTACTGATGAGATGGAGTCCAAGCTTCTTCAATTATATGCCTATGAGAATTCAAGAAAGCATGGAAAGGATGAAGACACAGTTTATCATGATAATGCCCGAGTGCTTCTTCATGATGATAGCATATACCGAATTGAATGTTCATGTAGTCCAGGTCATCTATCCATTCAGCTAATGGAATTTGGCAATGATAAGCCTGAAGTGACGGCTGTTTCAATGGATCCTAATTTCTCAGCTTACCTGCACAATGATTTCCTCTCCATTCTTCCGGATGACAAAGAGCAGTCTGGAATCTACTTACACAGAAATAAGTGCAAGCATGCCTGCAGTGATGAAATTTCCGCTGCATGCGAGGCCATGGAAGGACTTAAGGTTGTTAATGGTCTGGAGTGTAAAATCACATGCAATTCATCGAAGATACAGAAGACTATTTGTTTCGCACAAAAGGCAGAAGAAGAAGTTTGCATAGAAGTGGTTCGTGCCGTCACCACCAGTCAAGGTCTTCAAATGGAAGCTCAAGCAGAGGACAACGATATCAACGATGGCTGTCGAGCTCATGATGCACATCCTATTACCTAA 4176 40.45 MKRSREDVNMESQLQRPVFSSRGESTVQSQMVGGGSLQKLTTNDALEYLKNVKDIFRDKKEKYEDFLEVMKEFKAQRIDTVGVIARVKQLFKGHRDLILGFNTFLPKGYAITCPLEDETPPQKKKPVQFEEAINFVGKIKTRFEGDNHVYKSFLEILNLYRKENKSISEVYREVSALLQDHPDLLREFVHFLPDASATTSNNHVSSMRNSVLRDRNSSIPPIQHKERAMTPHADHDIGVNHPDCDHARVTIKGDKEKCQHSEKEKDRRDNTDSMEQCREIDKKFIEHDSSKDISMQSFPQKRKSSVRVEDTTSVKWHLSGEGMSFIEKVRQKLPNVDVYQEFVKCLDIFDKEIITRSELHSLVRDLLGRYPDLMDAFGEFMILCDRTDGLLADIMSKKSLWNEGSLPRLAKVEEKDRNRDHEREDGFKDRDHGNRERDNRLEKSVAFGHNDVGSHKMSLFSSKDKYFGKPINELDLSNCERCTPSYRLLPKNYPIPFASQRTEIGDQVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTSKRVEDLLEKINLSDSPVHIEDHLTALNLRCIERLYGDHGLDVMDVLRKNAPLSLPVILTRLKQKQEEWARCRSDFNKVWAEIYFKNYQKSLDHRSFYFKQQDTKSLSTKALLSEIKEINEKKHKEEDVLLTITAENKRPIIPNLEFDYPDQDIHEDLYHLIKYSCRELCSTDQSDKAMKIWTTFLEPMLGIASRPLSSEVSKEIIRENNFAVRGTAIGMVGVSSSHTVGGDESKLRDPPRNEVGGVQPKQSSPCRVWPMNGDSCIEENSFHKANRVDSKVDSLCKLQFNENQDDSNERLVKSNVLVSAVLEQGKGKVTVETASGLRSTASRTWNGSVDKGLELASSQDGCSSRPLLSNGVMAEGSNAPSFNEKCDGHSKIEREEGELSPTGELEDNFSNYQEGSLDKAKDSAAGRQCFRAHADKISCRDVTRETHIDADDEGEESARRSSEDSENGSENCDISGTESIDGEDSTHEGQEDRGHNDHHSKVESEGEAEGMDDAHSAEGDGTVLPFSERFLLNVKPLAKYIPLALRDDKKNSRIFYGNDSFYVLFRLHRTLYERIRSAKINSSFGERKWRASNDTSPNDLYSRFMSALRSLLDGSSDNMKFEDDCRSIIGTQSYVLFTLDKLIYKLVKQLQTVATDEMESKLLQLYAYENSRKHGKDEDTVYHDNARVLLHDDSIYRIECSCSPGHLSIQLMEFGNDKPEVTAVSMDPNFSAYLHNDFLSILPDDKEQSGIYLHRNKCKHACSDEISAACEAMEGLKVVNGLECKITCNSSKIQKTICFAQKAEEEVCIEVVRAVTTSQGLQMEAQAEDNDINDGCRAHDAHPIT* 1392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8733549 8744350 - Chy9G163830.1 Chy09g00667 233564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00667 1391 MobiDBLite consensus disorder prediction 902 956 - -
Chy09g00667 1391 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 2 1341 - -
Chy09g00667 1391 MobiDBLite consensus disorder prediction 1026 1062 - -
Chy09g00667 1391 Pfam Sin3 family co-repressor 480 569 IPR013194 -
Chy09g00667 1391 MobiDBLite consensus disorder prediction 991 1013 - -
Chy09g00667 1391 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Chy09g00667 1391 MobiDBLite consensus disorder prediction 254 275 - -
Chy09g00667 1391 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Chy09g00667 1391 SMART hdac_interact2seq4b 478 582 IPR013194 -
Chy09g00667 1391 PANTHER SIN3B-RELATED 2 1341 IPR039774 GO:0003714
Chy09g00667 1391 ProSiteProfiles PAH domain profile. 125 195 IPR003822 GO:0006355
Chy09g00667 1391 ProSiteProfiles PAH domain profile. 314 384 IPR003822 GO:0006355
Chy09g00667 1391 SUPERFAMILY PAH2 domain 38 107 IPR036600 GO:0006355
Chy09g00667 1391 MobiDBLite consensus disorder prediction 783 810 - -
Chy09g00667 1391 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Chy09g00667 1391 Pfam Paired amphipathic helix repeat 148 192 IPR003822 GO:0006355
Chy09g00667 1391 Pfam Paired amphipathic helix repeat 337 380 IPR003822 GO:0006355
Chy09g00667 1391 Gene3D Paired amphipathic helix 314 385 IPR036600 GO:0006355
Chy09g00667 1391 MobiDBLite consensus disorder prediction 991 1065 - -
Chy09g00667 1391 MobiDBLite consensus disorder prediction 1 25 - -
Chy09g00667 1391 MobiDBLite consensus disorder prediction 412 439 - -
Chy09g00667 1391 MobiDBLite consensus disorder prediction 932 947 - -
Chy09g00667 1391 Gene3D Paired amphipathic helix 123 196 IPR036600 GO:0006355
Chy09g00667 1391 SUPERFAMILY PAH2 domain 321 381 IPR036600 GO:0006355
Chy09g00667 1391 SUPERFAMILY PAH2 domain 122 194 IPR036600 GO:0006355
Chy09g00667 1391 MobiDBLite consensus disorder prediction 11 25 - -
Chy09g00667 1391 MobiDBLite consensus disorder prediction 902 923 - -
Chy09g00667 1391 Pfam C-terminal domain of Sin3a protein 1101 1340 IPR031693 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00667 K11644 SIN3A; paired amphipathic helix protein Sin3a - csv:101208475 2639.37
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy09g00667 Chy10g00946 CCT
Chy09g00667 Chy10g00946 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00667 Chy-Chr9:8733549 Chy10g00946 Chy-Chr10:15028054 0 dispersed
Chy09g00667 Chy-Chr9:8733549 Chy09g01062 Chy-Chr9:13016284 5.29E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g802 . Blo16g01142 . Bda11g01246 Bpe13g01441 Bpe10g00817 . Bma15g00207 Cmo04g01680 . . . . . Sed01g4034 . Cpe01g01419 Bhi07g01656 Tan04g1162 . . . . . Cla05g02504 Cam05g2688 Cec05g2721 Cco05g2756 Clacu05g2691 Cmu05g2545 Cre05g2660 Cone13ag1005 Cone19ag0999 Cone8ag0633 Cone12ag0617 Lsi04g00502 Csa05g02381 Chy10g00946 Cme10g00481 . . Bda07g01576 Bda11g01246 Bpe11g01747 . Bma01g00071 . . . . Cma04g01604 . Car04g01646 . . . . . . . . . . . . . . . . . . Csa05g01727 Chy09g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012039 0 4 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 3 0 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18483 PF16879 Sin3a_C 1.50E-52 No_clan Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00667 Chy_Chr09 FPKM 0.0 0.0 0.0 0.0 1.818048 1.742909 1.999565 0.074617 0.0 0.0