Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00672 ATGTCAAGTAGTTCTATAAGATGTCTCTTGTTGCTCCAAAAATGCATCAATATGAACCAGCTAAAGCAAGCTCATGCCCAGGTTCTTACATCCGGCCTCCATAACAGCAACTTCGTTTTGAGCAGATTGTTGAATTTTTGTGCAGAATCCCGCAATGGCAGTCTTTCTCATGCATTCAAGCTCTTCCAACACATTCAACACCCCACCATTTGCATCTGCAACACCATGATCAAAGCCCTTCTGCTTCGAGGTGAATTTCTCAACGCCATTGCTGTTTTCTCTGCCATCTTTCGAAATGGGATCCACCCTGATATTTATACTCTTCCTTACGTTCTAAAGGCTTCTGCGAGGATGACTAATATTCACCTTGGAGAGTCCATTCATGCCTGTACTATAAAATTGGGGTCTGCAGTGAATGAATTTGTGGGGAATTCTTTACTTGTTATGTACCGCTCGTTTGACAACATGAGAAGTGCAAGACAAGTGTTCGATGAAATGCCTGAGTTAAGTGCTGTGTCATGGACGGTTATGATTTATGGGTATGCAAATATGGGTGATGTTGACACTGCAAGAAAGTTGTTTGACATGGCTACGGTTAAAGATACAGGGATATGGGGTGCTATGATATCTGGGTATGTGCAGAACAATTGCTTCAAGGAGGGGCTTCACATGTTCCGTCTGATGCAGCTGACTGAAGTAGACCCTGATGAAGCCATAATTGTGACAATCCTTACTGCTTGTGCTCATATGGGAGCTCTTGATACTGGGATTTGGATTCATAGGTATTTGGGTCGGCTAGGATTGCCATTAACTCTGCGAGTGAGCACTGGGCTAATAGATATGTATGCAAAATGTGGGCATTTGGACCTCGCTAAGTACCTTTTCAATGAAATGTCTCAGAGAGATAATGTTTGTTGGAACGCAATGATTTCAGGAATGGCAATGGATGGAGATGGAGAAGGTGCAATCAAACTCTTCATGGAGATGGAAAAGGCTGGAATAAAGCCTGACAACATTACTTTCATAGCCGTTTTGGCTGCTTGTAGCAACTCAGGTATGGTCCATGAAGGTATAAGGATATGGAATAGAATGTCTACAATACACAAAATTGAGCCAAAGAGTGAACATTTTGGGTGTGTAATTGACCTGCTGAGTCGAGTTGGGCGGTTTGAGGAAGCAGAGGGAGTGATTCAAAGGCTTCCTAAAACAGCCAGCCCTTCAGAGGAAGCAGTGGCTTGGAGAGCATTTCTAAGCGCTTGCTGCAAGCATGGGCAAACGCAGCAGGCAGAGGTTGCTGCTGAGAGGTTGTTCCAACTGGAAAGGCATAGTGGGGCTTATGTTTTGCTCTCAAATATGTATGCTGCTTTGGGGAAGCATGAGGATGCTAAAAGAGTGAGGAACATGATGAAGTTGAAAGGGGTTGAGAAGGTACCTGGTTGCAGCTCTATCAAAGTAAATGGGGTTGTCAATGAATTCATTGCAGGGGAAAAGACACACCGCCACATTGATAATATACACTTGGTTTTGGAAGAGTTGAATAAACAAATTGTTGAAGCTGATCTTGAAGGTATAATATCAACCGCTCACAATGGATATTGA 1599 43.28 MSSSSIRCLLLLQKCINMNQLKQAHAQVLTSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICICNTMIKALLLRGEFLNAIAVFSAIFRNGIHPDIYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARKLFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVDPDEAIIVTILTACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNITFIAVLAACSNSGMVHEGIRIWNRMSTIHKIEPKSEHFGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLERHSGAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIKVNGVVNEFIAGEKTHRHIDNIHLVLEELNKQIVEADLEGIISTAHNGY* 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8783823 8785421 + Chy9G163880.1 Chy09g00672 233569

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00672 532 Pfam PPR repeat family 302 349 IPR002885 -
Chy09g00672 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Chy09g00672 532 Pfam PPR repeat 276 301 IPR002885 -
Chy09g00672 532 Pfam PPR repeat 377 400 IPR002885 -
Chy09g00672 532 Pfam PPR repeat 204 229 IPR002885 -
Chy09g00672 532 Pfam PPR repeat 72 101 IPR002885 -
Chy09g00672 532 Pfam PPR repeat 172 196 IPR002885 -
Chy09g00672 532 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 2 515 - -
Chy09g00672 532 Coils Coil 502 522 - -
Chy09g00672 532 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 515 - -
Chy09g00672 532 TIGRFAM PPR: pentatricopeptide repeat domain 205 237 IPR002885 -
Chy09g00672 532 TIGRFAM PPR: pentatricopeptide repeat domain 72 105 IPR002885 -
Chy09g00672 532 TIGRFAM PPR: pentatricopeptide repeat domain 277 302 IPR002885 -
Chy09g00672 532 TIGRFAM PPR: pentatricopeptide repeat domain 304 337 IPR002885 -
Chy09g00672 532 TIGRFAM PPR: pentatricopeptide repeat domain 172 196 IPR002885 -
Chy09g00672 532 Pfam E motif 425 483 IPR046848 -
Chy09g00672 532 Gene3D Tetratricopeptide repeat domain 357 523 IPR011990 GO:0005515
Chy09g00672 532 Gene3D Tetratricopeptide repeat domain 154 261 IPR011990 GO:0005515
Chy09g00672 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Chy09g00672 532 Gene3D Tetratricopeptide repeat domain 262 356 IPR011990 GO:0005515
Chy09g00672 532 Gene3D Tetratricopeptide repeat domain 4 153 IPR011990 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00672 - - - csv:101218858 1043.88
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00672 Chy-Chr9:8783823 Chy08g01018 Chy-Chr8:17377337 2.47E-127 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g52 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01731 Chy09g00672 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014116 1 1 0 1 0 1 1 1 1 1 1 1 0 0 1 1 1 2 0 1 1 1 1 0 0 1 0 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00672 Chy_Chr09 FPKM 23.962025 25.28558 30.726385 32.705456 19.276855 18.713867 21.20796 15.985277 17.572203 20.09399