Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00672 ATGTCAAGTAGTTCTATAAGATGTCTCTTGTTGCTCCAAAAATGCATCAATATGAACCAGCTAAAGCAAGCTCATGCCCAGGTTCTTACATCCGGCCTCCATAACAGCAACTTCGTTTTGAGCAGATTGTTGAATTTTTGTGCAGAATCCCGCAATGGCAGTCTTTCTCATGCATTCAAGCTCTTCCAACACATTCAACACCCCACCATTTGCATCTGCAACACCATGATCAAAGCCCTTCTGCTTCGAGGTGAATTTCTCAACGCCATTGCTGTTTTCTCTGCCATCTTTCGAAATGGGATCCACCCTGATATTTATACTCTTCCTTACGTTCTAAAGGCTTCTGCGAGGATGACTAATATTCACCTTGGAGAGTCCATTCATGCCTGTACTATAAAATTGGGGTCTGCAGTGAATGAATTTGTGGGGAATTCTTTACTTGTTATGTACCGCTCGTTTGACAACATGAGAAGTGCAAGACAAGTGTTCGATGAAATGCCTGAGTTAAGTGCTGTGTCATGGACGGTTATGATTTATGGGTATGCAAATATGGGTGATGTTGACACTGCAAGAAAGTTGTTTGACATGGCTACGGTTAAAGATACAGGGATATGGGGTGCTATGATATCTGGGTATGTGCAGAACAATTGCTTCAAGGAGGGGCTTCACATGTTCCGTCTGATGCAGCTGACTGAAGTAGACCCTGATGAAGCCATAATTGTGACAATCCTTACTGCTTGTGCTCATATGGGAGCTCTTGATACTGGGATTTGGATTCATAGGTATTTGGGTCGGCTAGGATTGCCATTAACTCTGCGAGTGAGCACTGGGCTAATAGATATGTATGCAAAATGTGGGCATTTGGACCTCGCTAAGTACCTTTTCAATGAAATGTCTCAGAGAGATAATGTTTGTTGGAACGCAATGATTTCAGGAATGGCAATGGATGGAGATGGAGAAGGTGCAATCAAACTCTTCATGGAGATGGAAAAGGCTGGAATAAAGCCTGACAACATTACTTTCATAGCCGTTTTGGCTGCTTGTAGCAACTCAGGTATGGTCCATGAAGGTATAAGGATATGGAATAGAATGTCTACAATACACAAAATTGAGCCAAAGAGTGAACATTTTGGGTGTGTAATTGACCTGCTGAGTCGAGTTGGGCGGTTTGAGGAAGCAGAGGGAGTGATTCAAAGGCTTCCTAAAACAGCCAGCCCTTCAGAGGAAGCAGTGGCTTGGAGAGCATTTCTAAGCGCTTGCTGCAAGCATGGGCAAACGCAGCAGGCAGAGGTTGCTGCTGAGAGGTTGTTCCAACTGGAAAGGCATAGTGGGGCTTATGTTTTGCTCTCAAATATGTATGCTGCTTTGGGGAAGCATGAGGATGCTAAAAGAGTGAGGAACATGATGAAGTTGAAAGGGGTTGAGAAGGTACCTGGTTGCAGCTCTATCAAAGTAAATGGGGTTGTCAATGAATTCATTGCAGGGGAAAAGACACACCGCCACATTGATAATATACACTTGGTTTTGGAAGAGTTGAATAAACAAATTGTTGAAGCTGATCTTGAAGGTATAATATCAACCGCTCACAATGGATATTGA 1599 43.28 MSSSSIRCLLLLQKCINMNQLKQAHAQVLTSGLHNSNFVLSRLLNFCAESRNGSLSHAFKLFQHIQHPTICICNTMIKALLLRGEFLNAIAVFSAIFRNGIHPDIYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVFDEMPELSAVSWTVMIYGYANMGDVDTARKLFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFRLMQLTEVDPDEAIIVTILTACAHMGALDTGIWIHRYLGRLGLPLTLRVSTGLIDMYAKCGHLDLAKYLFNEMSQRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNITFIAVLAACSNSGMVHEGIRIWNRMSTIHKIEPKSEHFGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEVAAERLFQLERHSGAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIKVNGVVNEFIAGEKTHRHIDNIHLVLEELNKQIVEADLEGIISTAHNGY* 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8783823 8785421 + Chy9G163880.1 Chy09g00672 233569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00672 532 Pfam PPR repeat family 302 349 IPR002885 -
Chy09g00672 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Chy09g00672 532 Pfam PPR repeat 276 301 IPR002885 -
Chy09g00672 532 Pfam PPR repeat 377 400 IPR002885 -
Chy09g00672 532 Pfam PPR repeat 204 229 IPR002885 -
Chy09g00672 532 Pfam PPR repeat 72 101 IPR002885 -
Chy09g00672 532 Pfam PPR repeat 172 196 IPR002885 -
Chy09g00672 532 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 2 515 - -
Chy09g00672 532 Coils Coil 502 522 - -
Chy09g00672 532 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 515 - -
Chy09g00672 532 TIGRFAM PPR: pentatricopeptide repeat domain 205 237 IPR002885 -
Chy09g00672 532 TIGRFAM PPR: pentatricopeptide repeat domain 72 105 IPR002885 -
Chy09g00672 532 TIGRFAM PPR: pentatricopeptide repeat domain 277 302 IPR002885 -
Chy09g00672 532 TIGRFAM PPR: pentatricopeptide repeat domain 304 337 IPR002885 -
Chy09g00672 532 TIGRFAM PPR: pentatricopeptide repeat domain 172 196 IPR002885 -
Chy09g00672 532 Pfam E motif 425 483 IPR046848 -
Chy09g00672 532 Gene3D Tetratricopeptide repeat domain 357 523 IPR011990 GO:0005515
Chy09g00672 532 Gene3D Tetratricopeptide repeat domain 154 261 IPR011990 GO:0005515
Chy09g00672 532 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Chy09g00672 532 Gene3D Tetratricopeptide repeat domain 262 356 IPR011990 GO:0005515
Chy09g00672 532 Gene3D Tetratricopeptide repeat domain 4 153 IPR011990 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00672 Chy-Chr9:8783823 Chy08g01018 Chy-Chr8:17377337 2.47E-127 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00672 - - csv:101218858 1043.88