Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00673 ATGGGGCACCAATTTCCATTCATACCGTTCTCCCTCATCCTCTTCCTTTTTGCTCTTCCTCGTCAATCTGTTCTCTGCAAAACCTTGAAACGCGATGTGAAAGCTTTGACTGAAATCAAAGCCTCTCTCGGCTGGAGAGTGGTGTATTCCTGGGTAGGAGATGATCCCTGTGGTGCTTCTCACCTTCCACCCTGGTCCGGCGTTACCTGTTCCACTCAAGGAGATTACAGAGTCGTCACTGAGTTAGAAGTCTATGCGGTTTCTATTGTTGGACCTTTTCCTGTTGCGGTTACCAATCTCTTGGACCTTACTAGGCTGGATCTTCATAATAACAAGTTGACTGGACCAATTCCTCCTCAAATTGGACGGTTAAGACGTCTCAAAATACTGAATTTAAGGTGGAATAAACTTCAAGATGTCATCCCTCCTGAGATTGGTGCACTAAAGAGCCTAACTCATTTATATTTGGGTTTCAATAATTTCAAAGGAGAAATCCCCAAAGAACTTGTTAATCTACGGGAGCTCCGCTATCTCCATTTAAATGAAAATCGCCTTTCAGGGAAAATTCCTCCTGAACTGGGCACCCTACCCAATCTTCGGCACCTGGATCTTGGCAACAACCATTTAGTAGGAACCATAAGGGAGCTGATTCGCCTTGAGGGCTGTTTTCCATCACTCCGCAACCTGTACATCAACAATAATTATTTTACGGGAGGAGTTCCATCACAGCTTGCAAACCTGACTAACTTGGAAATTCTGTACCTCTCCTACAACAAGATGTCTGGGATAATACCACCCGGGGTTGCTCATATACCTAAGTTGACTTATTTGTACTTGGATCACAACCAATTTAGTGGAAGAATCCCTGATGCCTTCTATAAACACCCATTCTTAAAAGAGATGTTCATTGAAGGAAATGCATTTCGGCAAGGTGTGAAGCCAATAGGTTTCCACAAGGTTCTTGAAGTTTCTGATGCCGAATTCCTTGTTTAA 993 43.5 MGHQFPFIPFSLILFLFALPRQSVLCKTLKRDVKALTEIKASLGWRVVYSWVGDDPCGASHLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPVAVTNLLDLTRLDLHNNKLTGPIPPQIGRLRRLKILNLRWNKLQDVIPPEIGALKSLTHLYLGFNNFKGEIPKELVNLRELRYLHLNENRLSGKIPPELGTLPNLRHLDLGNNHLVGTIRELIRLEGCFPSLRNLYINNNYFTGGVPSQLANLTNLEILYLSYNKMSGIIPPGVAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMFIEGNAFRQGVKPIGFHKVLEVSDAEFLV* 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8792127 8795510 - Chy9G163890.1 Chy09g00673 233570

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00673 330 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Chy09g00673 330 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 10 329 - -
Chy09g00673 330 Pfam Leucine Rich Repeat 198 210 IPR001611 GO:0005515
Chy09g00673 330 ProSiteProfiles Leucine-rich repeat profile. 198 220 IPR001611 GO:0005515
Chy09g00673 330 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 10 329 - -
Chy09g00673 330 SUPERFAMILY L domain-like 61 308 - -
Chy09g00673 330 SMART LRR_typ_2 100 123 IPR003591 -
Chy09g00673 330 SMART LRR_typ_2 271 295 IPR003591 -
Chy09g00673 330 SMART LRR_typ_2 196 219 IPR003591 -
Chy09g00673 330 SMART LRR_typ_2 247 270 IPR003591 -
Chy09g00673 330 SMART LRR_typ_2 172 194 IPR003591 -
Chy09g00673 330 SMART LRR_typ_2 124 148 IPR003591 -
Chy09g00673 330 Gene3D Ribonuclease Inhibitor 183 325 IPR032675 -
Chy09g00673 330 Gene3D Ribonuclease Inhibitor 28 182 IPR032675 -
Chy09g00673 330 PRINTS Leucine-rich repeat signature 103 116 - -
Chy09g00673 330 PRINTS Leucine-rich repeat signature 196 209 - -
Chy09g00673 330 Pfam Leucine rich repeat 125 185 IPR001611 GO:0005515
Chy09g00673 330 Pfam Leucine rich repeat 224 284 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00673 - - - csv:101208963 652.514
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00673 Chy-Chr9:8792127 Chy05g01256 Chy-Chr5:16912310 1.00E-06 dispersed
Chy09g00673 Chy-Chr9:8792127 Chy10g01047 Chy-Chr10:15692996 5.98E-120 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g53 . . . . . . . Bma15g00135 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01732 Chy09g00673 Cme09g00691
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002810 1 3 0 1 1 2 2 2 1 1 2 2 2 2 2 2 2 2 3 1 2 1 2 2 2 2 2 3 5 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00673 Chy_Chr09 FPKM 12.214753 14.356173 5.889639 5.057624 27.533216 26.081638 26.370609 14.093103 11.794278 11.834126