Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00673 ATGGGGCACCAATTTCCATTCATACCGTTCTCCCTCATCCTCTTCCTTTTTGCTCTTCCTCGTCAATCTGTTCTCTGCAAAACCTTGAAACGCGATGTGAAAGCTTTGACTGAAATCAAAGCCTCTCTCGGCTGGAGAGTGGTGTATTCCTGGGTAGGAGATGATCCCTGTGGTGCTTCTCACCTTCCACCCTGGTCCGGCGTTACCTGTTCCACTCAAGGAGATTACAGAGTCGTCACTGAGTTAGAAGTCTATGCGGTTTCTATTGTTGGACCTTTTCCTGTTGCGGTTACCAATCTCTTGGACCTTACTAGGCTGGATCTTCATAATAACAAGTTGACTGGACCAATTCCTCCTCAAATTGGACGGTTAAGACGTCTCAAAATACTGAATTTAAGGTGGAATAAACTTCAAGATGTCATCCCTCCTGAGATTGGTGCACTAAAGAGCCTAACTCATTTATATTTGGGTTTCAATAATTTCAAAGGAGAAATCCCCAAAGAACTTGTTAATCTACGGGAGCTCCGCTATCTCCATTTAAATGAAAATCGCCTTTCAGGGAAAATTCCTCCTGAACTGGGCACCCTACCCAATCTTCGGCACCTGGATCTTGGCAACAACCATTTAGTAGGAACCATAAGGGAGCTGATTCGCCTTGAGGGCTGTTTTCCATCACTCCGCAACCTGTACATCAACAATAATTATTTTACGGGAGGAGTTCCATCACAGCTTGCAAACCTGACTAACTTGGAAATTCTGTACCTCTCCTACAACAAGATGTCTGGGATAATACCACCCGGGGTTGCTCATATACCTAAGTTGACTTATTTGTACTTGGATCACAACCAATTTAGTGGAAGAATCCCTGATGCCTTCTATAAACACCCATTCTTAAAAGAGATGTTCATTGAAGGAAATGCATTTCGGCAAGGTGTGAAGCCAATAGGTTTCCACAAGGTTCTTGAAGTTTCTGATGCCGAATTCCTTGTTTAA 993 43.5 MGHQFPFIPFSLILFLFALPRQSVLCKTLKRDVKALTEIKASLGWRVVYSWVGDDPCGASHLPPWSGVTCSTQGDYRVVTELEVYAVSIVGPFPVAVTNLLDLTRLDLHNNKLTGPIPPQIGRLRRLKILNLRWNKLQDVIPPEIGALKSLTHLYLGFNNFKGEIPKELVNLRELRYLHLNENRLSGKIPPELGTLPNLRHLDLGNNHLVGTIRELIRLEGCFPSLRNLYINNNYFTGGVPSQLANLTNLEILYLSYNKMSGIIPPGVAHIPKLTYLYLDHNQFSGRIPDAFYKHPFLKEMFIEGNAFRQGVKPIGFHKVLEVSDAEFLV* 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8792127 8795510 - Chy9G163890.1 Chy09g00673 233570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00673 330 Pfam Leucine rich repeat N-terminal domain 30 71 IPR013210 -
Chy09g00673 330 PANTHER LEUCINE-RICH REPEAT DOMAIN, L DOMAIN-LIKE PROTEIN-RELATED 10 329 - -
Chy09g00673 330 Pfam Leucine Rich Repeat 198 210 IPR001611 GO:0005515
Chy09g00673 330 ProSiteProfiles Leucine-rich repeat profile. 198 220 IPR001611 GO:0005515
Chy09g00673 330 PANTHER DI-GLUCOSE BINDING PROTEIN WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 10 329 - -
Chy09g00673 330 SUPERFAMILY L domain-like 61 308 - -
Chy09g00673 330 SMART LRR_typ_2 100 123 IPR003591 -
Chy09g00673 330 SMART LRR_typ_2 271 295 IPR003591 -
Chy09g00673 330 SMART LRR_typ_2 196 219 IPR003591 -
Chy09g00673 330 SMART LRR_typ_2 247 270 IPR003591 -
Chy09g00673 330 SMART LRR_typ_2 172 194 IPR003591 -
Chy09g00673 330 SMART LRR_typ_2 124 148 IPR003591 -
Chy09g00673 330 Gene3D Ribonuclease Inhibitor 183 325 IPR032675 -
Chy09g00673 330 Gene3D Ribonuclease Inhibitor 28 182 IPR032675 -
Chy09g00673 330 PRINTS Leucine-rich repeat signature 103 116 - -
Chy09g00673 330 PRINTS Leucine-rich repeat signature 196 209 - -
Chy09g00673 330 Pfam Leucine rich repeat 125 185 IPR001611 GO:0005515
Chy09g00673 330 Pfam Leucine rich repeat 224 284 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00673 Chy-Chr9:8792127 Chy05g01256 Chy-Chr5:16912310 1.00E-06 dispersed
Chy09g00673 Chy-Chr9:8792127 Chy10g01047 Chy-Chr10:15692996 5.98E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00673 - - csv:101208963 652.514