Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00681 ATGGCTTCCTCATCCCTTCCCCTTCTTCCCCAACCATTTGCTCGAATTCCATCCTCTACCTTTCACTCCTCTGAAATTTCTTCCAATCTTCACAACAATGTTCGATTCACTTCCCTCGTCCACAAATCTCCAACTTCTCTAACTGCTCCGTCTTTCTCGTCTTCTTCCACTTACTCTCCACTTCTTCGCAAATCCATCGCATTTGCCGCCTCCATTTCCCTTCTCATGTGGCCCACACCAGCGAATGCCGGATTTCTATCGGGATTCTCTGGAATCGAATCGGTTCCTGGTCCGGAATTGCCTCAAATCGACTTTCTCAATCGCTTCAATGAAGAAAATCAGAAGAAATACGCGGAATTTGATGCCAGATTCAAATCATCTCCACTGCTGAAAGAACTTCTAGAGCGATCGAAGCTGAACAAGGAAAAGAACCGTCAGAAAATTGTTGAGAAATATTGCATCCGTGGTGCCGAATGGGGAGTTGGAGATTGCTCGGCAGAGGGAATGTCGCCGGAGGAGAGGGACAAATTCATCTCAATGTTGAAGCAAAAGGCTGGAGTGGATGATTGA 570 46.49 MASSSLPLLPQPFARIPSSTFHSSEISSNLHNNVRFTSLVHKSPTSLTAPSFSSSSTYSPLLRKSIAFAASISLLMWPTPANAGFLSGFSGIESVPGPELPQIDFLNRFNEENQKKYAEFDARFKSSPLLKELLERSKLNKEKNRQKIVEKYCIRGAEWGVGDCSAEGMSPEERDKFISMLKQKAGVDD* 190
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8911301 8912263 + Chy9G163970.1 Chy09g00681 233578

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00681 189 PANTHER OS03G0210700 PROTEIN 1 188 - -
Chy09g00681 189 PANTHER OS03G0210700 PROTEIN 1 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00681 - - - csv:101209452 350.903
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g74 . Blo16g01096 . Bda11g01187 Bpe13g01385 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0922 . . . . . . . . . . Bda11g01187 . . . Bma06g00727 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01743 Chy09g00681 Cme09g00681
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010993 2 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00681 Chy_Chr09 FPKM 11.128446 12.045759 15.543941 14.975022 16.132725 16.375074 14.578487 12.406051 12.592101 11.493212