Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00682 ATGTACAGGACAGTGGCTACATCTGCGGCCACAACTACCACAACAGATAGCCTGGATTATGTTGTAAATTTGGATCAAATTCCACGTTGGAGTGATGCAGAACATAGGTCTTCATTGGAGTTCGTTAACGAAGATCCTTCCTTCTCTAATTCTTACTTTCCTGATCCTCTCACGTCTCCATCTGACGCCGAAGGTGGGACCAATGGAGTCGTTTCGAGATTTCCCGTAGATCATGAAATTAATTCTAAAATATATCTCTGGAGGGGGAATCCATGGAATCTCGAGGTAGATGCTGTCGTGAATTCTACGAACGAGAACTTGGATGAAGCGCACAGCAGCCCTGGTTTACATGCTGCTGCAGGACCTGGTCTATTAGATGAATGTGGAACACTTGGTGGTTGCCGCACAGGAATGGCAAAAGTCACTAATGCTTATGACCTTCCAGCAAGAAAGGTCATACATACTGTTGGTCCAAAATATGCTGTCAAATACCATACTGCTGCAGAGAATGCTCTGAGCCATTGCTACCGTTCTTGCCTTGAACTTCTCATTGAAAATGGGCTTCAGAGCATTGCTATGGGTTGTATATATACAGAGGCAAAAAACTATCCCCGTGAACCTGCTGCACACGTAGCAATAAGAACTGTGCGTCGTTTTCTCGAGAAGCAGAGAGATAAAATTAAAGCGGTTGTATTTTGTACAACATCATCAGTAGATACAGAAATATACAAGAGGTTGCTTCCTCTGTACTTTCCTCGTGATAAACACGAGGAAGAAGTTGCATTATCAAAGCTTCCTGCAGATGTTGGAGATGAGAATGGTGAGACCATTATAGACGAGCGGAAAATAAGGATAAAACCTTTACCCAAAAAGAATGTTCCAAAGCCTCCCCAAGTTCTTAATGATACTCCTGTCAGTGATGTAAGGTTGACACGGAGGAACTCATCATATTTGGATTCATACTTGGATCCTGCTTTCATGGCTTTAATCAAAGACCCAGATCAAAGACGCAAGGAACAATGGGAAAAAACTGCCCAGGCGCAGACTGGATGGAACTATGGTAGAATACTTGGATTTGGTGACCTTGGTGGACCTCCTTTATCTGCTGCCGAAGAATACTCACTTCATTCAAGATACCTTGCTAAAGCAAATTCTCTTAATCTCTCTGAAATTGCGGAGATGAAAATCGTTTACCGTGGTGGAGTTGATAGTGAGGGTCGCCCTGTTATGGTTGTTGTGGGAGCACATTTTCTATTGCGTTGTCTTGATCTTGAGCGATTTGTACTCTACGTTGTAAAGGAGTTTGAGCCATTAATACAGAAGCCCTATACAATAGTGTACTTCCACTCAGCAGCTTCTTTGCAGCCTCGGCCAGACATGGGATGGATGAAGAGATTGCAGCAGATTCTTGGCCGAAAACACCAGCGTAACCTCCATGCAATATATGTTCTTCACCCAACCTTTGGATTGAAAGCTGCAGTATTGGCCATGCAATTGCTCGTGGATAATGTGGTATGGAACAAAGTTGTATACATTGATCGGCTACTGCAGCTATTCAAATACGTTCCTCGTGAGCAGTTGACCATCCCCGACTTTGTATTTCAGCACGACTTAGAAGTAAATGGAGGGAAGGGCTTGATTGTAGATCCTCGAACAAAATACGTATACCATCGGCCTTAG 1680 43.51 MYRTVATSAATTTTTDSLDYVVNLDQIPRWSDAEHRSSLEFVNEDPSFSNSYFPDPLTSPSDAEGGTNGVVSRFPVDHEINSKIYLWRGNPWNLEVDAVVNSTNENLDEAHSSPGLHAAAGPGLLDECGTLGGCRTGMAKVTNAYDLPARKVIHTVGPKYAVKYHTAAENALSHCYRSCLELLIENGLQSIAMGCIYTEAKNYPREPAAHVAIRTVRRFLEKQRDKIKAVVFCTTSSVDTEIYKRLLPLYFPRDKHEEEVALSKLPADVGDENGETIIDERKIRIKPLPKKNVPKPPQVLNDTPVSDVRLTRRNSSYLDSYLDPAFMALIKDPDQRRKEQWEKTAQAQTGWNYGRILGFGDLGGPPLSAAEEYSLHSRYLAKANSLNLSEIAEMKIVYRGGVDSEGRPVMVVVGAHFLLRCLDLERFVLYVVKEFEPLIQKPYTIVYFHSAASLQPRPDMGWMKRLQQILGRKHQRNLHAIYVLHPTFGLKAAVLAMQLLVDNVVWNKVVYIDRLLQLFKYVPREQLTIPDFVFQHDLEVNGGKGLIVDPRTKYVYHRP* 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 8921823 8942704 + Chy9G163980.1 Chy09g00682 233579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00682 559 SUPERFAMILY CRAL/TRIO domain 388 527 IPR036865 -
Chy09g00682 559 Pfam Divergent CRAL/TRIO domain 406 537 IPR001251 -
Chy09g00682 559 Gene3D Leucine Aminopeptidase, subunit E, domain 1 14 256 IPR043472 -
Chy09g00682 559 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 1 539 - -
Chy09g00682 559 CDD Macro_GDAP2-like 82 250 IPR035793 -
Chy09g00682 559 Gene3D - 389 540 IPR036865 -
Chy09g00682 559 ProSiteProfiles Macro domain profile. 71 251 IPR002589 -
Chy09g00682 559 PANTHER APPR-1-P PROCESSING ENZYME FAMILY PROTEIN 1 539 - -
Chy09g00682 559 Pfam Macro domain 100 212 IPR002589 -
Chy09g00682 559 SMART YBR022w_8 83 212 IPR002589 -
Chy09g00682 559 SUPERFAMILY Macro domain-like 73 280 IPR043472 -
Chy09g00682 559 SMART sec14_4 390 536 IPR001251 -
Chy09g00682 559 CDD SEC14 394 530 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00682 K24997 GDAP2; ganglioside-induced differentiation-associated protein 2 - csv:101209942 1112.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g02266 Chy-Chr6:26630898 Chy09g00682 Chy-Chr9:8921823 2.09E-11 dispersed
Chy09g00682 Chy-Chr9:8921823 Chy10g00320 Chy-Chr10:7962404 5.73E-13 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g75 Blo01g00446 Blo16g01097 Bda01g02135 Bda11g01188 Bpe13g01386 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0547 Cone9ag0558 . . . . . . . Bda11g01188 . . Bma01g00115 Bma06g00726 . . . . . . . . . . . . . . . . . . . . . . . . Csa05g01744 Chy09g00682 Cme09g00680
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003700 3 2 2 2 1 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 3 1 1 3 2 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00682 Chy_Chr09 FPKM 0.734536 0.0 0.0 0.0 1.060914 1.884753 2.609127 0.638228 0.0 0.0