Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00721 ATGGGGAAGAAGGGGGGTTGGTTTTCTGCTGTGAAGAAAGCATTTGCTCCTGAATCTAAGGAAAAGAAAGATCAGAAAACCAACAAATCAAAGAAAAGATGGTTTGGGAAGCCAAAGAAACTGGAGACAGTGACATCTGCAGAGCCAGCTTCATTCGATGTGTCTGTTCTACCAATTGAAGAGGTGAAATTAGCAGATGCAGAGAATGAACAGAGCAAACATGCTTACTCTGTTGCCATTGCCACTGCAGTCGCTGCCGAGGCAGCCGTTGCAGCTGCTCAGGCTGCAGCTGAGGTCGTTCGGCTTACTACTATCCCTCGATACTCTGGGAAATCAAAGGAAGAAATAGCAGCCATCAAGATCCAGACTGCATTCCGTGGCTATTTGGCAAGGAGGGCCCTGCGGGCATTAAGAGGGTTGGTGAGGCTAAAGTCATTGATACAAGGCCAGTCTGTTAAAAGACAAGCAACAACCACATTAAGATGTATGCAGACTCTTGCTCGTGTCCAGTCACAGATTCGTGCAAGAAGAATTAGAATGTCAGAGGAGAATCAGGCTCTTCAGAGACAGCTCCAACAAAAACATGAAAGAGAGCTTGAGAGATTAACTACTTCTGCAAACAATGAATGGAATGATAGTACCAAATCAAAGGAGCAGATTGAATCCAGATTAGCTAACAGGCAAGAAGCAGCAACAAGAAGAGAAAGGGCATTGGCGTATGCTTACTCTCATCAGGTTCAATTCATTTCTTACTTTCTTGCTGAATTATTACCTCCCTGCTCAGATCATTGTTTTTCATTCTCATGGGCGTTTTCCCAACAGAATTCATGGAAGAATTCTTCAAAATCTGCAAACTCTACATTCATGGACCCGAACAATCCCCGCTGGGGATGGAGTTGGTTAGAACGATGGATGGCCGCTCGTCCATGGGAAACTAAGAGCACCATCGATTATCACGATCGTGGCTCCGTCAAGAGCGTGATCAGCCACACAACCTCGATCGGAGACATCGCCAAAGCTTACGCCCGTCGCGATCTCAATCTCGACATCATCAAGCAGTTTCCAAGGACTCCGACGAGCCAAAAAACAAGCCGAGCTCCGAGTCACCAATCGCCAGGGACTCCTACGAAGGCATATTCGTCACTATCTGCAGGGAGAAAATTGAAGCCGGATAGTCCAAGAGGAATTGGGTGGGGCGGAGACGCGGATTCCAGAAGCGCATTGAGCATAAAATCGGAAAGGTACAGGCGACACAGCATTGCTGGATCATCAGTGAGAGATGATGAAAGCTTCACGAGTTCGCCGTCGGTTCCAAGCTACATGGCATCAACAGAAGCAGCGAGGGCTAGGTCCAGGTTGTCGAGTCCAATGGGAACGGAGAAGACGGCGGGATCTCCGGGGAGTGTCGGAGCAAAGAAACGGCTGTCATTCCCAGGGTCGCCGGCGAACTCAAGGAGGCAGTCTGGTCCGCCGAAAATAGAGGCTAGTCCGATCAAGAATGTTGGAGAGAGAGAATTTACCGGCGAGAGCAGATAG 1536 48.44 MGKKGGWFSAVKKAFAPESKEKKDQKTNKSKKRWFGKPKKLETVTSAEPASFDVSVLPIEEVKLADAENEQSKHAYSVAIATAVAAEAAVAAAQAAAEVVRLTTIPRYSGKSKEEIAAIKIQTAFRGYLARRALRALRGLVRLKSLIQGQSVKRQATTTLRCMQTLARVQSQIRARRIRMSEENQALQRQLQQKHERELERLTTSANNEWNDSTKSKEQIESRLANRQEAATRRERALAYAYSHQVQFISYFLAELLPPCSDHCFSFSWAFSQQNSWKNSSKSANSTFMDPNNPRWGWSWLERWMAARPWETKSTIDYHDRGSVKSVISHTTSIGDIAKAYARRDLNLDIIKQFPRTPTSQKTSRAPSHQSPGTPTKAYSSLSAGRKLKPDSPRGIGWGGDADSRSALSIKSERYRRHSIAGSSVRDDESFTSSPSVPSYMASTEAARARSRLSSPMGTEKTAGSPGSVGAKKRLSFPGSPANSRRQSGPPKIEASPIKNVGEREFTGESR* 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 9637359 9640712 + Chy9G164370.1 Chy09g00721 233618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00721 511 MobiDBLite consensus disorder prediction 214 228 - -
Chy09g00721 511 MobiDBLite consensus disorder prediction 420 511 - -
Chy09g00721 511 SMART iq_5 113 135 IPR000048 GO:0005515
Chy09g00721 511 MobiDBLite consensus disorder prediction 425 441 - -
Chy09g00721 511 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 267 497 - -
Chy09g00721 511 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 251 - -
Chy09g00721 511 Pfam Protein of unknown function (DUF4005) 419 489 IPR025064 -
Chy09g00721 511 ProSiteProfiles IQ motif profile. 114 142 IPR000048 GO:0005515
Chy09g00721 511 PANTHER IQ-DOMAIN 5-RELATED 267 497 - -
Chy09g00721 511 PANTHER IQ-DOMAIN 5-RELATED 1 251 - -
Chy09g00721 511 Pfam IQ calmodulin-binding motif 117 135 IPR000048 GO:0005515
Chy09g00721 511 MobiDBLite consensus disorder prediction 354 404 - -
Chy09g00721 511 Gene3D - 88 140 - -
Chy09g00721 511 MobiDBLite consensus disorder prediction 17 38 - -
Chy09g00721 511 MobiDBLite consensus disorder prediction 354 381 - -
Chy09g00721 511 Coils Coil 177 197 - -
Chy09g00721 511 MobiDBLite consensus disorder prediction 209 228 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00721 - - - csv:101209731 855.899
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02086 Chy-Chr4:26265661 Chy09g00721 Chy-Chr9:9637359 1.61E-77 dispersed
Chy07g00958 Chy-Chr7:14202843 Chy09g00721 Chy-Chr9:9637359 7.68E-26 dispersed
Chy09g00721 Chy-Chr9:9637359 Chy10g01339 Chy-Chr10:17688916 3.65E-127 dispersed
Chy11g01727 Chy-Chr11:23681797 Chy09g00721 Chy-Chr9:9637359 9.80E-34 transposed
Chy08g00816 Chy-Chr8:15732048 Chy09g00721 Chy-Chr9:9637359 6.63E-118 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy09g00721 . 1 499 IQD Protein Family AT3G52290 51.7 2.2e-98 356.3
Chy02g01601 . 1 295 IQD Protein Family AT3G22190 62.5 6.6e-76 281.6
Chy07g00252 . 1 466 IQD Protein Family AT2G26180 56.8 1.5e-112 403.3
Chy02g00253 . 1 274 IQD Protein Family AT2G33990 52.9 4.0e-63 238.4
Chy07g00958 . 65 240 IQD Protein Family AT2G33990 54.7 1.3e-48 190.3
Chy02g00253 . 1 232 IQD Protein Family AT3G15050 50.9 4.7e-56 214.9
Chy07g00958 . 68 241 IQD Protein Family AT3G15050 61.6 9.8e-54 207.2
Chy11g01727 . 1 513 IQD Protein Family AT4G00820 50.4 6.4e-108 388.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00721 Chy_Chr09 FPKM 33.589649 36.52298 29.045374 30.716877 22.740614 21.625132 23.265793 272.767303 262.42218 276.80307