Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00791 ATGGTTTTCTCTTCAGTTCCTGTGTTCCTTGATCCACCCAATTGGCCTTCTCAGCAACCAAATCAGCTCCAAGTAAGTGGTTGTGAGACCAATAATGCTCAACACCTTCCACCTCCGGCACCGTCAGCTAATAGTGGCGGTGGTGGAGGTGGTGGAGGAGGCGGTGGAGGTGGACCTGGATCAATTAGACCAGGGTCAATGACGGATCGAGCTAGGTTAGCAAAGATACCGCAACCAGAAGCAGGATTAAAGTGTCCTAGATGTGAATCAACAAACACGAAGTTTTGTTACTTCAACAACTATAGTCTCACTCAGCCTCGCCACTTTTGCAAGACGTGCCGCCGGTATTGGACGAGAGGTGGAGCGATGAGGAACGTACCGGTCGGAGGCGGGTGTCGGCGGTCTAGTAAGAGAAGTAGCAAAGGAGGAAGCAATAATAGGTCAAAATCACCAGGAGGATCAAGCACTTCAACAAGCACAGTATCATCAAATAGTTGTACAACAGATATAATTAGCCAACAATTAGCTCATCATCATCATCCTCCTCCAACAACCCATTTGCCCTTTTTCTCTCAAAATTTACACCATCTTAGTGAATTTGGAAACCTTGGTTTAAATTTTGAAGCCCTTCAAATTCCTAATTCACTCCCATCATCAGCTGAATCATCCTCAGTTTTATCAAGTGGAATTATTTCAGATCATCATCCATGGAAAATACCTTTTTTTGGAAATTTACATCAACAAAATGGGATTTATTCAAACTTCATGGCTGATCAAGATCATCATCATCAACAACAAACAGCTGATTTCACAAATTATCAAAGGTTGTCAAAGCCATTGTTGGAAAGTGGATTCAATCACCAATTGGAGAATATTAATATCAATAACAATAACAATAGCATGAAAATCTTGGAGGATACACAAGGGATTAACAATTTGTCAAGAAATTTTCTTGGAATTCAGCCAAATGAAGATCAATTCTGGAATTCTACAACAACAACAACAACAGCTGGAAATATTGGATGGAGTAGTGATCAAATTTCAGATCATTTCAACACAACTTCTTCCACTACTCATCTTTTGTAA 1086 40.7 MVFSSVPVFLDPPNWPSQQPNQLQVSGCETNNAQHLPPPAPSANSGGGGGGGGGGGGGPGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRNVPVGGGCRRSSKRSSKGGSNNRSKSPGGSSTSTSTVSSNSCTTDIISQQLAHHHHPPPTTHLPFFSQNLHHLSEFGNLGLNFEALQIPNSLPSSAESSSVLSSGIISDHHPWKIPFFGNLHQQNGIYSNFMADQDHHHQQQTADFTNYQRLSKPLLESGFNHQLENININNNNNSMKILEDTQGINNLSRNFLGIQPNEDQFWNSTTTTTTAGNIGWSSDQISDHFNTTSSTTHLL* 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10623346 10624619 + Chy9G165070.1 Chy09g00791 233688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00791 361 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 335 IPR045174 GO:0003700|GO:0006355
Chy09g00791 361 Pfam Dof domain, zinc finger 83 137 IPR003851 GO:0003677|GO:0006355
Chy09g00791 361 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 6 335 - -
Chy09g00791 361 ProSiteProfiles Zinc finger Dof-type profile. 83 137 IPR003851 GO:0003677|GO:0006355
Chy09g00791 361 MobiDBLite consensus disorder prediction 137 164 - -
Chy09g00791 361 ProSitePatterns Zinc finger Dof-type signature. 85 121 IPR003851 GO:0003677|GO:0006355
Chy09g00791 361 MobiDBLite consensus disorder prediction 29 67 - -
Chy09g00791 361 MobiDBLite consensus disorder prediction 124 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00791 - - - csv:101212561 616.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02140 Chy-Chr4:26625024 Chy09g00791 Chy-Chr9:10623346 3.23E-51 dispersed
Chy09g00791 Chy-Chr9:10623346 Chy12g00184 Chy-Chr12:2228183 5.25E-51 dispersed
Chy09g00791 Chy-Chr9:10623346 Chy10g00546 Chy-Chr10:12087430 7.32E-60 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy02g00228 CCT 6 164 C2C2-Dof Transcription Factor Family AT1G29160 52.0 9.3e-40 160.2
Chy09g01317 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.2e-42 168.7
Chy02g00228 CCT 6 164 C2C2-Dof Transcription Factor Family AT2G34140 51.5 1.7e-38 156.0
Chy04g02140 . 1 134 C2C2-Dof Transcription Factor Family AT2G37590 68.8 5.4e-41 165.2
Chy10g00546 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 63.1 1.5e-38 157.1
Chy09g00791 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 66.2 2.1e-37 153.3
Chy09g01317 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 79.8 7.1e-44 174.9
Chy04g02140 . 55 137 C2C2-Dof Transcription Factor Family AT3G55370 80.7 5.3e-37 152.1
Chy02g02411 . 28 336 C2C2-Dof Transcription Factor Family AT5G60850 51.6 1.7e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18487 PF02701 zf-Dof 4.60E-31 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00791 Chy_Chr09 FPKM 7.366129 10.248886 18.3274 15.776543 11.641579 11.46205 11.705834 20.86454 20.474817 19.516794