Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00808 ATGAGTAGTGGCAGTTACAATTCCACTTATTGTGTCTGCGCACCCGGATTCAGTCCCGATCCTCGAGGAGGAGCGCGGCAAGGATGCCACCGGAAACACAACGTGTCAAACAAACCCAAGTTTCTTCAACTGGATTTTGTGAATTTCAGAGGCGGGGTTAAACAAATCTCTTTGCAAACTCCAAATATTTCAGTCTGTCAAGCGGATTGCTTGAAGAATTCGAGCTGCGTGGGCTATACATTCAGCTTCGACGGCAACGGCAACGCCCACGCCCAGTGTGTGCTTCAGCTAGACATTTTGTCGAACGGGTTGTGGTCTCCTGGGATGAAGGCAGCTGCCTTTGTGAAGGTCGACAATTCGGAAACAGATCGCTCAAATTTCACCGGAATGATGTACAAACTCCAAACTACATGTCCAGTTCGCATAACCCTCCGGCCGCCACCGGTAAATAAAGACAACACCACCAGAAACATATTGATAATCAGTACCATATTCGTTGCCGAACTAATTACCGGTGCAGTTTTCTTCTGGGCATTCTTGAAGAGATTTGTAAAATACAGAGACATGGCTCGCACGCTTGGTCTCGAATCACTTCCCGCCGGCGGCCCAAAGCGGTTCAATTATGCCGAGCTAAAGACGGCCACAAACGACTTCTCGACCTGCATCGGAAGAGGGGGATTCGGCGAAGTCTTCAAGGGGGAGCTGCCAGACAAACGCGTGGTAGCCGTCAAGTGCTTGAAAAACGTCGCCGGAGGTGACCGTGACTTTTGGGCGGAGGTCACCATCATCGCGAGGATGCACCATCTTAACTTGCTTCGATTGTGGGGATTCTGCGCAGAAAAGGGTCAGAGAATTTTAGTATACGAACATATCCCGAATGGATCGCTGGACAAATTCCTGTTTGTGAAACATTCAGCTTCCGATTCGGAGAAGGAGGAAAGAGAGACGGAAGAACAGAGCTCACCGCTGGATTGGAGCATCCGGTACCGAATCGCCATCGGAGTAGCGAGAGCAATCGCGTACTTGCACGAGGAATGCTTGGAATGGGTGTTGCATCGAGACATAAAACCAGAGAACATCCTTCTAGACAACGATTTCTGCCCGAAGTTATCAGATTTCGGGTTGTCGAAGTTGAGGAAAAACGAGGAGACAACGGTGAGTATGTCTCGGATCAGAGGGACGCCTGGTTATGTAGCACCGGAGCTGGTGAAATTGGGTTCAAATTCAATAACGACGAAGGCAGATGTGTACAGTTTCGGGATGGTGCTGCTGGAGATAATCAGCGGGACAAGGAATTTTGAGATAAAGAGATGGACGGTGGAGAGTGCAGATTGGTACTTTCCAGGATGGGCATTCGAGAAGGCGTTCGTGGAGGAGAAGATGAAAGAGATATTAGACGGTCGGATAAGGGAAGAATACGAGAGGGGAGGTAATGTATGTATTGTTAATCGAATGGTGGAAACGGCGATGTGGTGTCTTCAAAACCAACCGGAGAAGAGACCGTCGATGGGGAAAGTGGTGAAGATGTTGGAAGGGAAGCTTGAAATTCCTCCTCCAGAAAAGCCTTCTATTTACTTCTTGCATTACTTCAGAGGCGATCGATGTGGAATGCCTTTCCTTTTATGCAAAAGCTTCTTTGGATTCAAGACGGTCTTCACTTGCCATGCTTTAATCTCTTCAGTTGATTCAGCTACTGAGATCGATGATGATTCCATTTCACTTGCGATCGAGCAGAAGCGATTAGGCAAGTCTTGTATGTATCTCCCACAAGCTTCACAAGTACCTCCAAACTTCAATTTTGTCGACGGAGGTAATAAAGGGGTACCTGAATATTGCAACAATCAAGGTGGTCTTGTAAGTCGGGAACACGAACGACGTACTGATAAACATACTTACAGATCTGTAGCCGGCGATGAACACAATGAGATATCAGGCAATGCCTACAGATAG 1950 47.79 MSSGSYNSTYCVCAPGFSPDPRGGARQGCHRKHNVSNKPKFLQLDFVNFRGGVKQISLQTPNISVCQADCLKNSSCVGYTFSFDGNGNAHAQCVLQLDILSNGLWSPGMKAAAFVKVDNSETDRSNFTGMMYKLQTTCPVRITLRPPPVNKDNTTRNILIISTIFVAELITGAVFFWAFLKRFVKYRDMARTLGLESLPAGGPKRFNYAELKTATNDFSTCIGRGGFGEVFKGELPDKRVVAVKCLKNVAGGDRDFWAEVTIIARMHHLNLLRLWGFCAEKGQRILVYEHIPNGSLDKFLFVKHSASDSEKEERETEEQSSPLDWSIRYRIAIGVARAIAYLHEECLEWVLHRDIKPENILLDNDFCPKLSDFGLSKLRKNEETTVSMSRIRGTPGYVAPELVKLGSNSITTKADVYSFGMVLLEIISGTRNFEIKRWTVESADWYFPGWAFEKAFVEEKMKEILDGRIREEYERGGNVCIVNRMVETAMWCLQNQPEKRPSMGKVVKMLEGKLEIPPPEKPSIYFLHYFRGDRCGMPFLLCKSFFGFKTVFTCHALISSVDSATEIDDDSISLAIEQKRLGKSCMYLPQASQVPPNFNFVDGGNKGVPEYCNNQGGLVSREHERRTDKHTYRSVAGDEHNEISGNAYR* 650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10788988 10793957 + Chy9G165240.1 Chy09g00808 233705

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00808 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 350 362 IPR008271 GO:0004672|GO:0006468
Chy09g00808 649 Gene3D Transferase(Phosphotransferase) domain 1 291 516 - -
Chy09g00808 649 ProSiteProfiles Protein kinase domain profile. 216 514 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy09g00808 649 Pfam Protein kinase domain 221 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy09g00808 649 MobiDBLite consensus disorder prediction 624 649 - -
Chy09g00808 649 PANTHER OS07G0415500 PROTEIN 4 527 - -
Chy09g00808 649 CDD STKc_IRAK 222 512 - -
Chy09g00808 649 PANTHER OS10G0101000 PROTEIN 4 527 - -
Chy09g00808 649 ProSitePatterns Protein kinases ATP-binding region signature. 222 244 IPR017441 GO:0005524
Chy09g00808 649 SUPERFAMILY Protein kinase-like (PK-like) 199 511 IPR011009 -
Chy09g00808 649 ProSiteProfiles PAN/Apple domain profile. 29 119 IPR003609 -
Chy09g00808 649 Gene3D Phosphorylase Kinase; domain 1 187 290 - -
Chy09g00808 649 SMART serkin_6 216 510 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00808 - - - csv:101221701 1060.83
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00808 Chy-Chr9:10788988 Chy12g01422 Chy-Chr12:18279054 5.95E-72 dispersed
Chy12g01426 Chy-Chr12:18292493 Chy09g00808 Chy-Chr9:10788988 1.49E-69 dispersed
Chy09g00808 Chy-Chr9:10788988 Chy09g00809 Chy-Chr9:10800686 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g528 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone19ag0729 . . . Csa05g01971 . . . . . . . . . . . . Cmo15g00931 . Cma15g00892 . Car15g00838 Cpe13g00425 . Bhi12g00960 . . . . . Lcy10g1599 Cla01g00650 . . . . . . Lsi09g00703 . Chy09g00808 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003119 0 2 1 0 0 2 2 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71469 PF00069 Pkinase 2.20E-45 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00808 Chy_Chr09 FPKM 0.175192 1.284553 3.199656 3.175334 2.038491 1.449988 0.0 19.771536 20.607138 20.726267