Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00817 ATGGGAGACGTGAAGGACAAGGTCAAGGGTTTCATGAAAAGGTTTAATAACACGTTGTCCTCATCTTCTTCTACGAATTTCAAGGGACAGGGAAGAGTTTTAGGTTCGTCTTCTTCTGGGTCGACTAGTTCTATGCCTACCCGCCCATCGGAGAATCCCATTTCAAAGCCAAAGCTTGTTAGTCCACCTTCAAATTCCTCTGCCAATTCTAAGCCCCCGGTTGCCAATTCGATTGCCACTGATCAAAACAGGTCGGACCCGTCGAATACATCGAATCCAGATCGTAAACCGGCCGATGGATTTGACCCATTTGACTCGTTTATAACATCTGGGAAAAGATCTGGAAATGGGTATTCCTTAAACGTGTTTGAATGTCCGATTTGTGGCCGGAGTTACAGGTCTGAAGAAGAGGTTTCGGTGCACGTAGATAGCTGTGTCAACGATAGTACAGCCAAGGGTGCAGAAGATCCGCCTACGAGTGATGCAGAACCTAGGAGTGAATTTGCTTGTATTGGTACTTTCTTATCAGGGAAGCCATCACAAGGTTCATTGGATATTGTTCTGAAGCTTTTGAGGAACATAGTTCGGGAACCAGAGAATTCAAAGTTTAGGAAGATTCGTCTGAGTAATCCCAAAATTAAGGAGGCAATTGGTGAGGCTGTTGGGGGAGTGGAATTGTTGGAGTTTTTGGGTTTTAAATTGCAAGAGGAAGATGGTGAAATGTGGGCAACCATGGAGGTTACAACGGAGGAACAAATTAACCTATTAAGTAAGGTAATCGATTTGATTGACCAGCCAAAGCTTGAAGAACAGCAAAAGAAAGCCAGCACAGCACCTGACCTGATTGAACCAAAGAAGGTGGACAGACAGATTCGGGTATTCTTGGCTGTCCCTGAAAACATTGCAGCCAAGATTGAACTACCAGACTCCTTTTACAGACTCTCTGTTGAAGAGGTTAAAAGAGAAGCTATAATGAGGAAGCAAAAGATTGCTGAATCTCAGCTTTTGGTTCCCAAATCATACAAGGAAAAACAAGCAAAAGCTGCTAGGAGGAAGTACACAAGAACGGTTATCAGAATTCAATTTCCGGATGGTGTGGTTCTTCAAGGTGTTTTTTCTCCTTGGGAACCAACAAGTGCTCTATATGAGTTTGTGAGCACGGCACTTAAAGAACCCTGTTTGGAATTTGAGTTGATACATCCTGTTGGTGTTAAACGACGTACAATCGCTCATTTTCCCGCAGAAGGAGAGAAATCTAAGACACTAGATGATGAGGAGTTAGTTCCCTCAGCTCTGGTCAAGTTTAGACCAATTGAAACAGATTCAGTTGTCTTCACAGGTTTGCGTAACGAACTGCTCGAGATAATCGAACCACTTGTAAGCGGTTCAGCCGTGGCTCCTCCTACGCAAGTTTAA 1416 43.79 MGDVKDKVKGFMKRFNNTLSSSSSTNFKGQGRVLGSSSSGSTSSMPTRPSENPISKPKLVSPPSNSSANSKPPVANSIATDQNRSDPSNTSNPDRKPADGFDPFDSFITSGKRSGNGYSLNVFECPICGRSYRSEEEVSVHVDSCVNDSTAKGAEDPPTSDAEPRSEFACIGTFLSGKPSQGSLDIVLKLLRNIVREPENSKFRKIRLSNPKIKEAIGEAVGGVELLEFLGFKLQEEDGEMWATMEVTTEEQINLLSKVIDLIDQPKLEEQQKKASTAPDLIEPKKVDRQIRVFLAVPENIAAKIELPDSFYRLSVEEVKREAIMRKQKIAESQLLVPKSYKEKQAKAARRKYTRTVIRIQFPDGVVLQGVFSPWEPTSALYEFVSTALKEPCLEFELIHPVGVKRRTIAHFPAEGEKSKTLDDEELVPSALVKFRPIETDSVVFTGLRNELLEIIEPLVSGSAVAPPTQV* 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10876316 10879708 - Chy9G165330.1 Chy09g00817 233714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00817 471 SUPERFAMILY PUG domain-like 180 251 IPR036339 -
Chy09g00817 471 SMART PGNneu 182 249 - -
Chy09g00817 471 SUPERFAMILY Ubiquitin-like 322 435 IPR029071 -
Chy09g00817 471 Gene3D - 345 437 - -
Chy09g00817 471 Gene3D - 176 266 - -
Chy09g00817 471 SMART c2hc_5 122 146 IPR006642 GO:0003677|GO:0006281
Chy09g00817 471 SMART ubx_3 348 437 IPR001012 GO:0005515
Chy09g00817 471 CDD PUB 169 265 - -
Chy09g00817 471 ProSiteProfiles UBX domain profile. 351 435 IPR001012 GO:0005515
Chy09g00817 471 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 461 - -
Chy09g00817 471 MobiDBLite consensus disorder prediction 15 107 - -
Chy09g00817 471 Pfam UBX domain 352 431 IPR001012 GO:0005515
Chy09g00817 471 MobiDBLite consensus disorder prediction 15 51 - -
Chy09g00817 471 MobiDBLite consensus disorder prediction 57 95 - -
Chy09g00817 471 CDD UBX_UBXN6 356 436 - -
Chy09g00817 471 Pfam PUB domain 181 252 IPR018997 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g00128 Chy-Chr3:1226544 Chy09g00817 Chy-Chr9:10876316 1.36E-06 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18488 PF00789 UBX 1.30E-05 CL0072 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00817 K14011 - csv:101209321 878.626