Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00823 ATGGAAAAAATCTTCCGGATTATCAATATCAATATTTCGACTCATAAATTACTCAATTCCTCTCCCAGAACTCCTCAACTTCTCACTCCGCTTGTACTCTTTCATGGTTCTAACAAAAATCTGACCTCAGATTCGGAGCTAGAACTCGATTCCGACAATCTCGGTTATCGGCCACCCGGATCTCGAAGACGCTGGATTTCTGAAGAACAGGTTGATCTTAGAGAGGTTTCAAAAGCAAGGGAGTTTAAAGTTCAGTTAGACCCATGGCCGGAATGGGTGGACTTCATGGAATGTTTGTCAAAGAAAGGGTACTTTGAAGGAGACAGAATCCCGTTTCTGAATGCCGAATTGGGTGCAAAAGATTTCAATCATATTCGGACTGCGTCTCTTGATTTCGCAAGGGATCGGTCTAACCTGATACGGTCCTTGTCCAGGAAAGACTTAGAAGTGATTGCAGGATGTGGATGCCCAAGCACAGATAGGAAAGTTGTGAACTCAGGGAAGCGTCTCAGAGCACATTTGGGCATTGATGAGGGAAATGTCTGCAGTTCTTGTGACCTGCAAAGAGACTGTGAGAGGGCATATGCAAAGGCATGTGGAGATGAAGGAGGTCGGACCTTGGATGTCATGCGCGTTTTGTTATTTTATGGGCTTGATCACATCTCTGCTATAGTGGAGAACAGACCATGTCTGAACAAAAAAGCCAATGACTCTGTTAGAAAGCTGTTGAAAGATATTGTTGAACATAGTACAGGAGAACGTGAATCTGATCTTCTAAAGTCTAAGGAGGTTACTTCAGCAGAAAATCACGACACAAGTGCTCCAGCGACACGAGGCGACTGGCATTGTCCAAAATGCAACTTTTTCAACTTTACTAGAAACGTCAAGTGCTTACGCTGTGGTCATATATTCCTTGAGAGACTTCGGAAACTTAATGAGGATCAAGTCAATCTTCCGTTGAAGAAGGGCGACTGGATTTGCGACATGTGTAATTTCTTGAACTTTGCTAAAAATTCTACATGTTTGCAATGCAAAGAGAAGCCTTTGAATCGACGGCTGAATCAAGGGGAATGGGAATGCGAATCATGCAACTATATCAATTTTCGAAAGAACACGCAGTGCTTGAAGTGTGATCACCAACGGAGAAAAGCACTAAATATGCGAAGCGTTTCTGCTGGACCTGCAGCTGAGAATGGAAACTACAGTTTCAGTAAGCCTAAACTCTCTTTTGGTGAAGTTGGAAATAATGCAAGTAGAAAAAATGATGGTTGGATGTGGAGATTTGGTGAAAATGAGAGTGAAGATGATTCCGGATTTCTTGATTTCCCTATTGCTCGCTCTTCTGGTAGTACAGAAAGACAAGAAAGAAGGAAAGTGGAGATGTTAGAGAAGAGAAAATTCATGGAAAATGCAGTAGAGAAAGAAGAAGATCTGATCTTGAGATCTAACAATATTGAAAGAAGATTTGAGTTTGTTGAATCTTCTGATGATGAAGACATAATCGAATGGTTTGGACACAAGCCAGAATCAAGCAAATAG 1539 41.78 MEKIFRIININISTHKLLNSSPRTPQLLTPLVLFHGSNKNLTSDSELELDSDNLGYRPPGSRRRWISEEQVDLREVSKAREFKVQLDPWPEWVDFMECLSKKGYFEGDRIPFLNAELGAKDFNHIRTASLDFARDRSNLIRSLSRKDLEVIAGCGCPSTDRKVVNSGKRLRAHLGIDEGNVCSSCDLQRDCERAYAKACGDEGGRTLDVMRVLLFYGLDHISAIVENRPCLNKKANDSVRKLLKDIVEHSTGERESDLLKSKEVTSAENHDTSAPATRGDWHCPKCNFFNFTRNVKCLRCGHIFLERLRKLNEDQVNLPLKKGDWICDMCNFLNFAKNSTCLQCKEKPLNRRLNQGEWECESCNYINFRKNTQCLKCDHQRRKALNMRSVSAGPAAENGNYSFSKPKLSFGEVGNNASRKNDGWMWRFGENESEDDSGFLDFPIARSSGSTERQERRKVEMLEKRKFMENAVEKEEDLILRSNNIERRFEFVESSDDEDIIEWFGHKPESSK* 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 10932437 10935074 - Chy9G165390.1 Chy09g00823 233720

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00823 512 ProSiteProfiles Zinc finger RanBP2 type profile. 321 344 IPR001876 -
Chy09g00823 512 ProSiteProfiles Zinc finger RanBP2 type profile. 277 301 IPR001876 -
Chy09g00823 512 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 3 265 - -
Chy09g00823 512 ProSitePatterns Zinc finger RanBP2-type signature. 281 300 IPR001876 -
Chy09g00823 512 Coils Coil 458 478 - -
Chy09g00823 512 MobiDBLite consensus disorder prediction 254 275 - -
Chy09g00823 512 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 275 300 - -
Chy09g00823 512 SUPERFAMILY Ran binding protein zinc finger-like 274 302 IPR036443 -
Chy09g00823 512 SUPERFAMILY Ran binding protein zinc finger-like 315 347 IPR036443 -
Chy09g00823 512 PANTHER ZINC FINGER PROTEIN 3 265 - -
Chy09g00823 512 PANTHER ZINC FINGER PROTEIN 275 300 - -
Chy09g00823 512 ProSitePatterns Zinc finger RanBP2-type signature. 358 377 IPR001876 -
Chy09g00823 512 PANTHER ZINC FINGER PROTEIN 298 510 - -
Chy09g00823 512 Gene3D - 312 349 - -
Chy09g00823 512 Gene3D - 269 302 - -
Chy09g00823 512 Gene3D - 350 383 - -
Chy09g00823 512 Pfam Zn-finger in Ran binding protein and others 356 378 IPR001876 -
Chy09g00823 512 Pfam Zn-finger in Ran binding protein and others 279 301 IPR001876 -
Chy09g00823 512 Pfam Zn-finger in Ran binding protein and others 321 345 IPR001876 -
Chy09g00823 512 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 298 510 - -
Chy09g00823 512 ProSiteProfiles Zinc finger RanBP2 type profile. 354 383 IPR001876 -
Chy09g00823 512 SMART zf_4 279 303 IPR001876 -
Chy09g00823 512 SMART zf_4 323 347 IPR001876 -
Chy09g00823 512 SMART zf_4 356 380 IPR001876 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00823 - - - csv:101209154 1018.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02305 Chy-Chr2:27085118 Chy09g00823 Chy-Chr9:10932437 5.92E-10 dispersed
Chy05g01093 Chy-Chr5:15420119 Chy09g00823 Chy-Chr9:10932437 3.42E-57 dispersed
Chy07g00008 Chy-Chr7:102994 Chy09g00823 Chy-Chr9:10932437 1.90E-12 dispersed
Chy09g00823 Chy-Chr9:10932437 Chy05g01332 Chy-Chr5:17452482 5.42E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g489 . . . Bda11g00183 Bpe13g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0370 . . Csa05g01992 . . . . . Bda11g00183 . . . . . . Cmo15g01024 . Cma15g00977 . Car15g00923 Cpe13g00350 Cpe04g01365 Bhi12g00936 . . . Hepe02g2626 . . Cla01g00635 . . Cco01g0681 Clacu01g0651 Cmu01g0625 Cre09g1879 Lsi09g00684 . Chy09g00823 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011612 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00823 Chy_Chr09 FPKM 1.175735 1.115327 0.113977 1.034088 4.093078 4.303319 4.276784 1.019346 1.027575 1.157281