Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy09g00829 | ATGGACCCTCCCCCTCAACAGATCCCTCTCTTACCTTCCCGTCAGCCCCCCTCCAACTCTGACGCCTCCACTTCCCCAATCGGCCCTCTTGCCCTTCTCTTGGGTCGCGCCACTGGCCGCCGTGGAACTTCTATGCTCGTTCGTGAGACAGCGGCACGTGAACTTGAAGAGCGCCGCATCGATTGGGGCTATTCCAAGCCTGTAGTCGCCCTTGACATTACGTGGAATTTAGCTTTTGTTTTCGTTTCCCTGGGTGTGCTTATTCACTCTGTCCATGAAAAACCCAAAACGCCAATTCGGCTTTGGATTGTGGTTTATGCGGCTCAGTGCTTGGTGCACGTTGTGCTTGTGTGGTTTGAGTTTAAGAGGAGGAATGCGAGGAGAGCTAGGGATATGGAGACGCAGCAACAGCAGCAGCCTGATGGTTATGTAACTAATGAAAGCAATGAAGACGATGGTGGCCAAAGGAGTTTTTCCAGTGCTGCGAAAAGATGTGAGTCAGTGAACACTCTGGTATCGTTAATTTGGTGGTTGTTTGGCTTTTACTGGGTCGTTGCTGGTGGTAACATCCTCATGCAGAATGCTCCATCTTTATACTGGCTGGCTGTTGTATTCCTGGCCTTTGATGTGTTCTTTGCAGTATTTTGTGTTGTTTTGGCATGTTTGATTGGAATTGCTCTCTGTTGCTGCTTGCCTTGCATTATAGCCATCCTTTATGCTGTTGCAGGCCAGGAAGGTGCAACCGATGCTGATTTAAGTATGCTTCCTAAGTATAGATATCGAGTGTCCAATGAGCCTTCTCCGGGGGATGGGTTGATGGTTCCAGTAGAGACTAGCAGTAGATACTTGACAACTGAGCGCGTTCTGTTATGCGAGGATGCGGAGTGCTGTATATGTCTTAGTCCATACGAGGATGGAGTTGAGCTTCATGCTCTTCCCTGCAATCACCATTTTCATTATGCGTGCATCACAAAATGGCTGAAGATGAATGCAACATGTCCTCTGTGCAAGTATAATATTCTTAAGAATTGTGAACGTGTGTAA | 1044 | 47.99 | MDPPPQQIPLLPSRQPPSNSDASTSPIGPLALLLGRATGRRGTSMLVRETAARELEERRIDWGYSKPVVALDITWNLAFVFVSLGVLIHSVHEKPKTPIRLWIVVYAAQCLVHVVLVWFEFKRRNARRARDMETQQQQQPDGYVTNESNEDDGGQRSFSSAAKRCESVNTLVSLIWWLFGFYWVVAGGNILMQNAPSLYWLAVVFLAFDVFFAVFCVVLACLIGIALCCCLPCIIAILYAVAGQEGATDADLSMLPKYRYRVSNEPSPGDGLMVPVETSSRYLTTERVLLCEDAECCICLSPYEDGVELHALPCNHHFHYACITKWLKMNATCPLCKYNILKNCERV* | 348 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 10983666 | 10987172 | - | Chy9G165450.1 | Chy09g00829 | 233726 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy09g00829 | 347 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| Chy09g00829 | 347 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 243 | 342 | IPR013083 | - | |
| Chy09g00829 | 347 | MobiDBLite | consensus disorder prediction | 130 | 157 | - | - | |
| Chy09g00829 | 347 | Pfam | Ring finger domain | 295 | 337 | IPR001841 | - | |
| Chy09g00829 | 347 | ProSiteProfiles | Zinc finger RING-type profile. | 296 | 337 | IPR001841 | - | |
| Chy09g00829 | 347 | SMART | ring_2 | 296 | 336 | IPR001841 | - | |
| Chy09g00829 | 347 | MobiDBLite | consensus disorder prediction | 132 | 157 | - | - | |
| Chy09g00829 | 347 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE RIE1-LIKE | 7 | 343 | - | - | |
| Chy09g00829 | 347 | PANTHER | TARGET OF ERK KINASE MPK-1 | 7 | 343 | - | - | |
| Chy09g00829 | 347 | SUPERFAMILY | RING/U-box | 282 | 342 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy06g01970 | Chy-Chr6:23724069 | Chy09g00829 | Chy-Chr9:10983666 | 3.53E-117 | dispersed | |
| Chy08g00213 | Chy-Chr8:4931006 | Chy09g00829 | Chy-Chr9:10983666 | 8.42E-79 | dispersed | |
| Chy09g00829 | Chy-Chr9:10983666 | Chy06g02255 | Chy-Chr6:26578748 | 2.60E-11 | dispersed | |
| Chy09g00829 | Chy-Chr9:10983666 | Chy02g02573 | Chy-Chr2:28940268 | 6.54E-11 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy09g00829 | - | - | csv:101211704 | 643.654 |