Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00833 ATGACCGGACCAGAGTCATCCGTAGCTAAGGAATTGGGTATTTCCCGCACATCGGCGGCAGAGAAGAAAGACGAAGAACTTACTTCCATGTCTGAGAATCAGGAACCGCCAAATCCGGCGTCTGTGGCTGAAGCAGGGCCACCGCATGAGGCGTTGTTTCATGTTGTGAGTTATCTTCCTCTCTTTGAGCTTCTTTCCCTGAGCGCAGTCTGTGTATCGCTGAGAGACGCAGTGGAACATGATGTGTTGCCGTGGCTTCACATCGTCGTCGATGGGCGATTGAGCTCCCGGTTGTCCGATTACACTCTAGGGAGAATCGCCCGGAAGGCGAGTGGCCGCCTTAGAACTTTGGCTTTGATCAATTGTTTCAAGATTTCAGATTCTGGACTTCACGAAGTTGTTGAGAACAATCCTCTTCTCACCAAGCTTTATGTACCCGGATGCACTAGTTTGACTCCTGAGGGAGTGGTTAGAGCAGTGAAGACTTTGTCCCAAGATTCTCACAATTTGAAGAATCTAATGATTGGTGGCATTTACAACATAGAGAACCAACACCTTGAAGTCCTCAGATCCCATCTTCTTGAAAACCGATCACAGAACAAGCAGCAGGAGTGGCGACAGGTACACCATCTGTACCATGAGTACGTTGACCGGCCGAAGTTGTTGAGTAGCGATTTCCTGCCAGTGATTGATGTACAAATCTGCCCAAAATGCTATGACATAAGGAATGTCTATGATTGCTCAAGGGAGAGATGCAAGATAAAGCAAGGAGAGAATTTGCTGGCAGATTGCCGGGGTTGCATTTGTTGCATTCCAAGGTGTGAAGAATGCGGCGGATGCGTGGATGATGATGAAATAGAAGAGGCAATATGTTCAGATATCTTGTGTTCAAGTTGCTGGCTTCAACTTCCCAAATGCAACCATTGTAATAGGCCATATTGCAAGCGACACCGTGATAATGTAAGTAGCTCTACTGCTGGCTTTGTTGAACATGGTATATTTGATTTACTCTTCAATTTGATTAAGCCCGTGGCTCTAAGTAGAGATGTTTGCAGGGGTCAAGGTGGGAACAAAAAACCCACAATCCCCTATATTACAAATGCCATGACCATAGCCATCAAAGTTGCAACGGTTCGGGAAAAGCTGCTGGCTCTTGAAAAGATCTTGAACTTCCTTTTCGAAGCTCGGAAAGAGTGGTGTCAAACTTCAAGCTGTGGTCGTATAGAATTCCTGGCCAAACTTTCGTTGATTCCGGTTTCAAGTCCTGTGATTCTTCCTGAAATTCCAAGGGCTCGAGCTGTTGGAACTGGGAATGAGAAGATGGATCAATCACAACGATCCTCATCACTAACGACAGTCTCCACTTCCCGTGCTTACCAGTTCCACCCAGCTCGAGCTGCCATTGTCAATCTCTTCGACCTCTACTTAGGAAGGAGTAATCGTCTAAAGCATGAAGATTCAGCTAGAGAACCTCCGAACAAGGCTCAAAAGCGTGTACTAGCTATTAACAGAGAGCTTCCTCCTCGAAATGAGCAATTCCTTTTAGATTTTGAGCAAATTCAGAATCAATTTTCAGACCATGATCAGTTGCGTGCTGTGACTGAGTCTGTTCTCATCTCCCTAGTTGTGCAGTGCAGTGGTCATGTACCAAGGGCAGAATTTCTTCTCTTTGCTTTACGGAGTTTATGCAGTATAGGTTACATCAATTGGGACACTTTTCTGCCATCCCTTCTTTCTTCAATCTCATCTGCAGAAGTTTCCATGGGTCAGGGAAGTCAAGCTGCGCCTACTGTCTCAACAACAAATTTATCACAGTCTGGGGTGCTTCCATCCTCAAATCCAGTGCCTAATAGTTCTACCTTTCAATCTTCCAATCCTGCCTCTCCATTACCATTGGTTCATGGAATCAGTTCACCCGCTCAGTCTAGTATTGATCCATCTTCTAGCACAGCATTGTCACCAATCAAATCCTCTGATCTTTCTGGGACTGGATTACCATCTGCAGTTCGGGTCAACTCATTTTTGAGAAATAATGCAATAAGCAGTCTTCGTCAGCTTTGTTGCAAGATTATCTTAAGTGGTCTTAAATTTAATTTGAAACCAGTGACTCATGCTGATATCTTTTCCCACATGCTCAATTGGATGGTTAATTGGGACCAACGGCAACAGGGGATGGAGGAATCTGAGAATATGAAATCCTGGAGGCCTGACAAGGCTCTCATTGAATGGCTACATAGCTGTTTGGATGTAGTCTGGCTTTTGGTTGAGGAGAATAAATGTCGGGTGCCCTTCTATGAATTACTACGCAGTGGTTTGCAATTCATAGATAACATTCCTGATGATGAAGCCTTATTTACACTCATGTTGGAGATCCATAGGAGGCGAGATATGATGGCAATGCACATGCAGATGTTGGATCAACACCTTCACAGCCCTACATTTGGCACTCAACGGATTTTTTCTCAAACAATGCAGAACATATCTGGTGAAGCAGTAGCAAGCTTGCGCTATTCACCAATCACATACCCAAGTGTTCTTGGTGAACCTCTTCATGGCGAGGATATTGCATCTGCTATTCAGAGAGGAACTCGAGATTGGGAAAGAGCTATGCGTTGTATAAGGCATGCTCTTCGCACAACTCCATCACCGGACTGGTGGAAGCGTGTGCTTCTTGTGGCTCCTGGCTATAGGTCTTCTGCACAAGGACTCAGTCCTGGTGCAGTTTTTACATCGGAGATGATATGTGAGGCGACAATTGATAGAATATTTGAGCTTTTGAAGTTGACGAATTCAGAGATACATTGCTGGCAAGAGTGGCTTGTTTTCTCGGATATATTCTTTTTTCTGATGAAAAGTGGATGTATCGATTTTGTGGACTTTGTGGCTAAGCTGTTCTCTCGCGTAACAGAGGGAGGTCAACATGTTTTAAGGACAAATCATGTCACTTGGCTGTTTGTACAAATCATCCGGGTTGAACTTGTGATGAGTGCTTTGAATTCAGATGCAAGGAAGGTTAATTTTGAATGA 3027 44.63 MTGPESSVAKELGISRTSAAEKKDEELTSMSENQEPPNPASVAEAGPPHEALFHVVSYLPLFELLSLSAVCVSLRDAVEHDVLPWLHIVVDGRLSSRLSDYTLGRIARKASGRLRTLALINCFKISDSGLHEVVENNPLLTKLYVPGCTSLTPEGVVRAVKTLSQDSHNLKNLMIGGIYNIENQHLEVLRSHLLENRSQNKQQEWRQVHHLYHEYVDRPKLLSSDFLPVIDVQICPKCYDIRNVYDCSRERCKIKQGENLLADCRGCICCIPRCEECGGCVDDDEIEEAICSDILCSSCWLQLPKCNHCNRPYCKRHRDNVSSSTAGFVEHGIFDLLFNLIKPVALSRDVCRGQGGNKKPTIPYITNAMTIAIKVATVREKLLALEKILNFLFEARKEWCQTSSCGRIEFLAKLSLIPVSSPVILPEIPRARAVGTGNEKMDQSQRSSSLTTVSTSRAYQFHPARAAIVNLFDLYLGRSNRLKHEDSAREPPNKAQKRVLAINRELPPRNEQFLLDFEQIQNQFSDHDQLRAVTESVLISLVVQCSGHVPRAEFLLFALRSLCSIGYINWDTFLPSLLSSISSAEVSMGQGSQAAPTVSTTNLSQSGVLPSSNPVPNSSTFQSSNPASPLPLVHGISSPAQSSIDPSSSTALSPIKSSDLSGTGLPSAVRVNSFLRNNAISSLRQLCCKIILSGLKFNLKPVTHADIFSHMLNWMVNWDQRQQGMEESENMKSWRPDKALIEWLHSCLDVVWLLVEENKCRVPFYELLRSGLQFIDNIPDDEALFTLMLEIHRRRDMMAMHMQMLDQHLHSPTFGTQRIFSQTMQNISGEAVASLRYSPITYPSVLGEPLHGEDIASAIQRGTRDWERAMRCIRHALRTTPSPDWWKRVLLVAPGYRSSAQGLSPGAVFTSEMICEATIDRIFELLKLTNSEIHCWQEWLVFSDIFFFLMKSGCIDFVDFVAKLFSRVTEGGQHVLRTNHVTWLFVQIIRVELVMSALNSDARKVNFE* 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11094931 11104451 - Chy9G165490.1 Chy09g00833 233730

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00833 1008 MobiDBLite consensus disorder prediction 592 626 - -
Chy09g00833 1008 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 264 275 IPR017900 -
Chy09g00833 1008 ProSiteProfiles F-box domain profile. 41 88 IPR001810 GO:0005515
Chy09g00833 1008 PANTHER BNAA09G30010D PROTEIN 634 1005 - -
Chy09g00833 1008 PANTHER BNAA09G30010D PROTEIN 441 609 - -
Chy09g00833 1008 Gene3D Ribonuclease Inhibitor 47 214 IPR032675 -
Chy09g00833 1008 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 634 1005 IPR021629 -
Chy09g00833 1008 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23 441 609 IPR021629 -
Chy09g00833 1008 SUPERFAMILY F-box domain 48 89 IPR036047 GO:0005515
Chy09g00833 1008 SUPERFAMILY RNI-like 108 194 - -
Chy09g00833 1008 MobiDBLite consensus disorder prediction 16 30 - -
Chy09g00833 1008 Pfam F-box domain 48 83 IPR001810 GO:0005515
Chy09g00833 1008 MobiDBLite consensus disorder prediction 1 45 - -
Chy09g00833 1008 SMART LRR_CC_2 137 162 IPR006553 -
Chy09g00833 1008 SMART LRR_CC_2 111 136 IPR006553 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00833 K15166 MED23; mediator of RNA polymerase II transcription subunit 23 - csv:101220785 1094.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01678 Chy-Chr3:18499541 Chy09g00833 Chy-Chr9:11094931 2.24E-48 dispersed
Chy09g00833 Chy-Chr9:11094931 Chy10g00808 Chy-Chr10:14088163 4.81E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g477 Blo01g00768 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0378 Cone9ag0407 . . . . . . . . . Bpe02g01978 Bma01g00480 . . . Cmo15g01018 . Cma15g00971 . Car15g00918 Cpe13g00355 . Bhi12g00929 . . . . . . Cla01g00626 Cam01g0655 Cec01g0647 Cco01g0672 Clacu01g0643 Cmu01g0618 Cre09g1886 Lsi09g00677 . Chy09g00833 Cme09g01365
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006882 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 3 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00833 Chy_Chr09 FPKM 14.835233 15.741328 11.207204 12.311816 7.958681 9.115305 8.712112 15.737514 14.028387 14.680157