Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00837 ATGTCTTGCTCCCAAACCCCATATCCAGACCTCTGCTTCCATTACATAAACCCAAACGACAACATACCGACGGCCCATATTGATGAAACTTATCTCATCACCCGTTTTCGAAACTCAGCTATTCAAGCCACTTTGTACCAAGCCATGAAGGTACGTGACCATCTTCGCTCTATCATGGATCTTGGTTCATTTGTTGATGATGACGATAGAAATAAAGTCGCCTTAATCGACTGTTTGGAATTGTACGAGGACTCGATTGCAGAGCTCAATCGTTCGACACTCAGTTCCACGAGTGCCAACTCGATCGACCATTCAACGATGCTAAGTGCTTCATTAGCAAACCATCAAACATGTCTAGACGGATTTCGAGATTTCGGATTTTTGGTTGATGATTCGAATAATTTCTTTCTTCCAACTCAAATTATGAGTAACTTCTCAAAATTGGTTAGCAATTCTCTTGCCATCACAAAGGCCATTGCGGCGGCACCCTCCACTAGTTCTTCCACCTTCTGTGGCCAGCCGCTACTAGATGGCTTGTGTCCCGAGTGGGTTTACGATGACGATAAGACGCTTCTCCAGGATATGGTGGGAAAGGGCGCAGATATGGTGGTGGCTCAAGATGGAAGTGGTGATTTTAGGACGATATCGGAGGCAGTGGCCGCGGTGGAGGAGGCGAGGAAGGGAAGTGTAAGTGGAAGGTTTGTTATATATGTAAAAGGTGGGATTTACAAAGAGAATGTTGTGATTGAGAAGAGAATGAAGAATATAATGATGGTTGGAGATGGAATGGATAGAACGATCGTCACAGCCATGAAGAACGTACAAGATGGATCAACAACTTTCCAATCAGCGACTTTTGCGGTGGCCGGCGAAGGATTCATCGCGAAAGATATGACGTTCGAGAACACAGCAGGGCCGGAGAAACACCAAGCCGTGGCACTCCGTTCTAATGCCGATTGCTCAATTTTTTACCGATGCAACTTTAAGGGCTATCAAGACACTCTATACGCCCACTCCAACCGCCAATTTTACCGTGAATGTCACATTTACGGAACCGTCGACTTCATTTTCGGCGATGGTGTTGTCGTTTTTCAAAATTGTAACATCTTCGTGAGAAAGCCGATGATGAATAAAAAAAACACCATCACGGCCCAAGCGAGGTCCGACCCGAATGAGAATACCGGGTTCGTGATCCACAATTCTGTAATCGGAGCGGCGCCGGATTTGAAGCCGGTGCAAGGTTTGTACGGAACTTATTTGGGGAGGCCATGGAAAGCGTATTCGAGGACGGTGATAATGAAGAGTTATTTGGACGGTCTGATTGAACCAGCCGGGTGGCTCCCTTGGGCCGGAAATTTTGGTCTGAGGACGGTTTATTATGGGGAGTTTATGAACACTGGTGATGGGGCTAATACGAAAGGGAGGGTGAAGTGGCCGGGATACCATGTGATGACGAGTGCGGCGGAGGCAGAGAGGTTTACCGTGGAGAGTTTCTTGGAAGGAGGTTGGATTCCGGCCACCGGAGTGCCATTTGTAAATGGGCTGTGA 1548 47.22 MSCSQTPYPDLCFHYINPNDNIPTAHIDETYLITRFRNSAIQATLYQAMKVRDHLRSIMDLGSFVDDDDRNKVALIDCLELYEDSIAELNRSTLSSTSANSIDHSTMLSASLANHQTCLDGFRDFGFLVDDSNNFFLPTQIMSNFSKLVSNSLAITKAIAAAPSTSSSTFCGQPLLDGLCPEWVYDDDKTLLQDMVGKGADMVVAQDGSGDFRTISEAVAAVEEARKGSVSGRFVIYVKGGIYKENVVIEKRMKNIMMVGDGMDRTIVTAMKNVQDGSTTFQSATFAVAGEGFIAKDMTFENTAGPEKHQAVALRSNADCSIFYRCNFKGYQDTLYAHSNRQFYRECHIYGTVDFIFGDGVVVFQNCNIFVRKPMMNKKNTITAQARSDPNENTGFVIHNSVIGAAPDLKPVQGLYGTYLGRPWKAYSRTVIMKSYLDGLIEPAGWLPWAGNFGLRTVYYGEFMNTGDGANTKGRVKWPGYHVMTSAAEAERFTVESFLEGGWIPATGVPFVNGL* 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11150722 11152979 + Chy9G165530.1 Chy09g00837 233734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00837 515 Coils Coil 512 515 - -
Chy09g00837 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 2 159 IPR035513 -
Chy09g00837 515 CDD PMEI-like_3 2 161 - -
Chy09g00837 515 SUPERFAMILY Pectin lyase-like 199 513 IPR011050 -
Chy09g00837 515 Pfam Pectinesterase 201 501 IPR000070 GO:0030599|GO:0042545
Chy09g00837 515 PANTHER PECTINESTERASE INHIBITOR 5-RELATED 2 514 - -
Chy09g00837 515 Pfam Plant invertase/pectin methylesterase inhibitor 2 155 IPR006501 GO:0004857
Chy09g00837 515 TIGRFAM PME_inhib: pectinesterase inhibitor domain 2 158 IPR006501 GO:0004857
Chy09g00837 515 PANTHER PECTINESTERASE 2 514 - -
Chy09g00837 515 ProSitePatterns Pectinesterase signature 2. 349 358 IPR033131 -
Chy09g00837 515 Gene3D - 198 515 IPR012334 -
Chy09g00837 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 160 IPR035513 -
Chy09g00837 515 SMART PMEI_2 1 155 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00257 Chy-Chr6:1725734 Chy09g00837 Chy-Chr9:11150722 6.31E-144 dispersed
Chy09g00837 Chy-Chr9:11150722 Chy01g02125 Chy-Chr1:25934718 3.80E-144 dispersed
Chy06g00857 Chy-Chr6:6182906 Chy09g00837 Chy-Chr9:11150722 2.12E-173 transposed
Chy06g01769 Chy-Chr6:20856795 Chy09g00837 Chy-Chr9:11150722 8.56E-142 transposed
Chy09g01018 Chy-Chr9:12752095 Chy09g00837 Chy-Chr9:11150722 2.45E-173 transposed
Chy10g01212 Chy-Chr10:16839372 Chy09g00837 Chy-Chr9:11150722 2.17E-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00837 - K01051 csv:101219120 981.089