Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00841 ATGGGAATTCCTAAACCCACAGACCCATCGCTCTTCCTCTGTCGTCTTCGTTTCTCCTCAGATTCTCTCTCGAAACGCCTTGTTTTCAGGAGGGTTAGCAGTGATGGTGGTGGTGGTGGTGCTGTTGATTCTTCACAGCATCCGTCTGCAACTCCTGACATCAAGGATGTACAGGATGATTCTTCTAGTGTTGGACACAGTTATGTGGCATTATTTGTCCGGATGCTCGGCTTAGATAATGATCCTCTTGATAGAGAACAAGCAATCATAGCTTTATGGAAATATTCTCTTGGAGGGAAGAAGCACATAGATGCCATCATGCAGTTTCCTGGATGCATAAATCTAGCAGTAAATCTTCTTAGGTCAGAGTCAATCTCTACATGTGAAGCAGCTGCTGGCCTTCTGCGGTCAATATCTCAGGTGAACTTATACCGAGAATCAGTTGCAGAAAGTGGAGCAATTGAAGAGATAACTGGCTTGCTTTGTCAACCGTCCTTGACTCCCGAGGTGAAGGAGCAAAGCATCTGTGTCTTGTGGAATTTGTCAGTAGATGAAAAACTCAGAATTAAGATTGCAAACACTGATATTCTGCCATTGCTTAGTAAGAATCTTGATGATGAGAACATGAAGGTGAAGGAAGCAGCTGGAGGGGTTTTAGCAAATCTGGCTTTGAGCCCTTGTAACCACGGGGTTATTGTCGAATTAGGCTTAATTCCTAAACTGGCGTATCAGTTGAAAGCTGAGGCAGACAGCTCAAAAATTCTGAGAAAGGAAGCAAGAAATGCATTGCTTGAACTTTCTAAAGATGGATATTATAGAATTCTTGTCATAGAGGAAGGACTGGTTCCAGTACCAATTCTTGGTGCTGCTGCTTATAAATCCTTCAGACCAGGCCTGCATTCATGGCCCAGTTTGCCCGATGGCATTGAAATTGAACAATCCAAAAAACCTTCAAGATATGGTGCCTCTCAATTACTCCTTGGGTTAAATGTTGATAAGAATGCAAACATAGAAGAAGGCAAGATAAATGCAATTGTTGGCCGGACACAGCAACAGTTTCTGGCTCGAATTGGTGCCATAGAAATCGAAGATCTGAAGGATTCTCAATCTGAATCACCTTCCAGAAACCATCTTACACTCTTACCTTGGATAGATGGTGTTGCTCGACTAGTTTTGATCCTTGAACTTGAGGATGATAATGCCATAGCAAGAGCTGCTGTGTCAATAGCTGATGCATCTATCAACGAACACATGCGTATTTCATTCAAGGAAGCTGGAGCAATCAAATATTTAGTAAAGTTCTTAGATTATATGAATGATTCTGTCAAATGGGCTGCAGTTCAAGCTCTAGAGAGACTGTCAATTAGTAATGTGGTTTGCCAGGCAATTGAAAATGAAGGTGCACTTGGTTCTTTGCTCAGTATTTTAAAGCTCTCAAGTATCCCCGAAAATGTGATGGAGAAGACCCTCAATATACTTTCTCGGATCTTGGACCCTAGTAAAGAAATGAAGTCAAAGTTTTACAGCGGACCGGTAAACGGATCTCAAGGGGGACAACATTCAGAAGGAAATTTTGAAGCTTCTATCAGGAAAGATGTGCTGGGTGCTGGTGTTGTTTCTCGCCTTGTTGAGATTTTGAACACCTCATCCCCAAACTTGAAACAGAAAGCTGCTTCTATCCTGGAATTTGTTTCTATCATGGACCCAAGCATGGAACTAATCGATCCTGTGGAGATAGAGTTGGGATTGTCGGCTGTTTTCCAGCTTGGAGTTTCAATAGATTCTGATGGTGAAGTTTGGCAGCCCGAAAGATATGCCCTTGAAGTTGAAGAAGCTGGTCTTGCAATTTCAGCGGCCTCCCGACTATTAACAAAGATTCTTGACTCTGAAAAGTTCAGCAACAAAATAAACTCCACCCATTTCACTAAATTGCTTCGTCGAATCCTTAAGTCGGACATTCCCATCAACCACAAAGATTGGATTGCTGCTTGCCTAATCAAACTCAACTCCGTCTTGACTCTGAACACAGATTCCGGAGATCCAATCAACATGGAGGTCACTCTATACGAAACAATACCAAGACTTATTGAACAGATTACAAGCTCCTTCTCATTGGAAGTTCAGGAATCTGCTGTTGTGGAGCTGAATAGAATAGTCTCTGAAGGAATAGTCGATGCTACCCGAGCCGTTGCTTCGAAAGGCGGTATCTTTCCATTAGTAAAGCTGATTGATGAAGGAAGTGAGAGAGCAGTAGAAGCAGCCTTAGCTGTACTGTATAATCTGAGCATGGACAGTGAAAATCATCCAGCAATCATAGCTGCTGGAGTTGTGCCAGCATTGAGGAGAATTGTTCTATCACAACGTGTGCAGTGGCAACAAGCTCTTTATTTGTTGAGGACGTTGCCTACATGA 2412 42.62 MGIPKPTDPSLFLCRLRFSSDSLSKRLVFRRVSSDGGGGGAVDSSQHPSATPDIKDVQDDSSSVGHSYVALFVRMLGLDNDPLDREQAIIALWKYSLGGKKHIDAIMQFPGCINLAVNLLRSESISTCEAAAGLLRSISQVNLYRESVAESGAIEEITGLLCQPSLTPEVKEQSICVLWNLSVDEKLRIKIANTDILPLLSKNLDDENMKVKEAAGGVLANLALSPCNHGVIVELGLIPKLAYQLKAEADSSKILRKEARNALLELSKDGYYRILVIEEGLVPVPILGAAAYKSFRPGLHSWPSLPDGIEIEQSKKPSRYGASQLLLGLNVDKNANIEEGKINAIVGRTQQQFLARIGAIEIEDLKDSQSESPSRNHLTLLPWIDGVARLVLILELEDDNAIARAAVSIADASINEHMRISFKEAGAIKYLVKFLDYMNDSVKWAAVQALERLSISNVVCQAIENEGALGSLLSILKLSSIPENVMEKTLNILSRILDPSKEMKSKFYSGPVNGSQGGQHSEGNFEASIRKDVLGAGVVSRLVEILNTSSPNLKQKAASILEFVSIMDPSMELIDPVEIELGLSAVFQLGVSIDSDGEVWQPERYALEVEEAGLAISAASRLLTKILDSEKFSNKINSTHFTKLLRRILKSDIPINHKDWIAACLIKLNSVLTLNTDSGDPINMEVTLYETIPRLIEQITSSFSLEVQESAVVELNRIVSEGIVDATRAVASKGGIFPLVKLIDEGSERAVEAALAVLYNLSMDSENHPAIIAAGVVPALRRIVLSQRVQWQQALYLLRTLPT* 804
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11215621 11221362 - Chy9G165570.1 Chy09g00841 233738

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00841 803 MobiDBLite consensus disorder prediction 44 61 - -
Chy09g00841 803 SUPERFAMILY ARM repeat 66 279 IPR016024 -
Chy09g00841 803 Gene3D - 606 802 IPR011989 -
Chy09g00841 803 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 734 776 IPR000225 GO:0005515
Chy09g00841 803 SMART arm_5 100 140 IPR000225 GO:0005515
Chy09g00841 803 SMART arm_5 184 224 IPR000225 GO:0005515
Chy09g00841 803 SMART arm_5 764 803 IPR000225 GO:0005515
Chy09g00841 803 SMART arm_5 415 455 IPR000225 GO:0005515
Chy09g00841 803 SMART arm_5 456 498 IPR000225 GO:0005515
Chy09g00841 803 SMART arm_5 526 566 IPR000225 GO:0005515
Chy09g00841 803 SMART arm_5 141 183 IPR000225 GO:0005515
Chy09g00841 803 SMART arm_5 678 720 IPR000225 GO:0005515
Chy09g00841 803 SMART arm_5 225 268 IPR000225 GO:0005515
Chy09g00841 803 SMART arm_5 723 763 IPR000225 GO:0005515
Chy09g00841 803 Gene3D - 362 583 IPR011989 -
Chy09g00841 803 SUPERFAMILY ARM repeat 386 791 IPR016024 -
Chy09g00841 803 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 152 185 IPR000225 GO:0005515
Chy09g00841 803 MobiDBLite consensus disorder prediction 33 61 - -
Chy09g00841 803 Gene3D - 53 290 IPR011989 -
Chy09g00841 803 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 14 803 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00841 - - - csv:101220075 1441.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00841 Chy-Chr9:11215621 Chy06g00053 Chy-Chr6:379928 1.51E-08 dispersed
Chy09g00841 Chy-Chr9:11215621 Chy02g02552 Chy-Chr2:28783066 8.20E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g458 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02014 . . . . . . . . . . . . Cmo15g00939 . Cma15g00902 . Car15g00841 Cpe13g00362 . Bhi12g00918 . . . Hepe02g2639 . . Cla01g00619 Cam01g0647 Cec01g0639 Cco01g0665 Clacu01g0635 Cmu01g0608 Cre09g1893 Lsi09g00669 . Chy09g00841 Cme09g01373
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011868 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00841 Chy_Chr09 FPKM 49.20557 57.079361 113.464935 108.850052 17.238489 17.959833 16.327578 8.438478 9.359416 7.881025