Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00865 ATGACTAAAGAGGATGATTTTAAGCTACTAAAGTTTCAGACTTGTGATCTCAGAGTGAACATTCACTGTGATGGGTGTAGGCTGAAAGTTAAGAAACTTCTTCAAAGGATAGAAGGAGTTTTTCAGGTTGAAATAGGTGCAGAGAATCAAAAGGTTACTGTTTTAGGCAATGTGGATTCCTCAACTTTGATCAATAAGCTGGTGAGAGCTGGAAAACATGCTGAGCTTTGGTCACAGAAAGGAAACCCAAGTCCGAAACCAAAGAACAAAGAGGATAAAACTCCGAACAAGGAACCGAAGCATCTTAAATTGACTACATTCAACTGTGACGATGATGAAATTGTTGATTGTGTTGAGGAAGGAGATGATTATGAAGTTGCACAGCTTCAGTTCAGAGATCTCCTCAGGCAGCGAGCAATCGAAGCGAACAATGCCGGGAAAGGTGGCATTGGGATCAGCCGAATTCCCGGGCTTGTTGCGGGAAATGGCAAGATGAACAACAACCACCACCACCACCTCAGCATTAACAACAAACCTGGGAATGGGAAGAAAATAGACCCTAATCAGCCAATGTCAATAAAAAATACCCCATCTGAGATTGACAGAAAAACTTTGGCAACTCTGAAGATGAACAATGCTCAACTTTTCGGTAACGGCCGGGAAAGTATCAATCCTGGGGAAGCGAAAAGAGCCAACAACGATCTGAATTCTATGATGAGCATGGCGGGATTCAACGGCGGCAACCTGTTAAATTTTGCCACTCCATCGTCAATTGATGTCAATTCAACAAACACCTCTCAAGGACTTCACCTTCAACAAAACAATGGCTATGGTTATGGCTATCAACCACCATCAACCTCTGGATTCTCCATGGCAACTGGTCAATATCATCACCAACAACAGCAACAACCAACCTTCATAAGTGGGTACAACCAGTATCAACAACAGCAGCAACCATTGATGAACATGAACAACATGCTAAATAGGCAAGCAATGAATCAACAGCCTCAAATGATGTACAATAGAGCTCAATTGGTTCCATCAAACACAGGATATTACTTCAGTTACAATCCAAGCCCCGTTCATCCAAGTTATCCTTATGTTCATGGCTACAACAGTAACTCTGCAGCTGATATGTTCAGTGATGAGAACACAAGCAGCAGTTGCTCAATTATGTAA 1179 42.15 MTKEDDFKLLKFQTCDLRVNIHCDGCRLKVKKLLQRIEGVFQVEIGAENQKVTVLGNVDSSTLINKLVRAGKHAELWSQKGNPSPKPKNKEDKTPNKEPKHLKLTTFNCDDDEIVDCVEEGDDYEVAQLQFRDLLRQRAIEANNAGKGGIGISRIPGLVAGNGKMNNNHHHHLSINNKPGNGKKIDPNQPMSIKNTPSEIDRKTLATLKMNNAQLFGNGRESINPGEAKRANNDLNSMMSMAGFNGGNLLNFATPSSIDVNSTNTSQGLHLQQNNGYGYGYQPPSTSGFSMATGQYHHQQQQQPTFISGYNQYQQQQQPLMNMNNMLNRQAMNQQPQMMYNRAQLVPSNTGYYFSYNPSPVHPSYPYVHGYNSNSAADMFSDENTSSSCSIM* 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11395389 11397146 + Chy9G165810.1 Chy09g00865 233762

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00865 392 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 37 1 392 - -
Chy09g00865 392 MobiDBLite consensus disorder prediction 162 194 - -
Chy09g00865 392 MobiDBLite consensus disorder prediction 74 102 - -
Chy09g00865 392 Gene3D - 12 82 - -
Chy09g00865 392 CDD HMA 16 75 IPR006121 GO:0046872
Chy09g00865 392 Pfam Heavy-metal-associated domain 17 72 IPR006121 GO:0046872
Chy09g00865 392 ProSiteProfiles Heavy-metal-associated domain profile. 20 76 IPR006121 GO:0046872
Chy09g00865 392 MobiDBLite consensus disorder prediction 85 102 - -
Chy09g00865 392 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED 1 392 - -
Chy09g00865 392 SUPERFAMILY HMA, heavy metal-associated domain 14 78 IPR036163 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00865 - - - csv:101214913 726.857
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy06g00615 Chy-Chr6:4178229 Chy09g00865 Chy-Chr9:11395389 1.56E-20 dispersed
Chy06g00995 Chy-Chr6:7464338 Chy09g00865 Chy-Chr9:11395389 2.60E-06 dispersed
Chy09g00865 Chy-Chr9:11395389 Chy08g01022 Chy-Chr8:17406739 5.12E-18 dispersed
Chy09g00865 Chy-Chr9:11395389 Chy11g01430 Chy-Chr11:21071886 2.90E-25 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g406 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0428 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g00865 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010233 3 1 3 2 2 1 1 0 1 1 0 0 1 1 1 1 0 2 0 0 1 1 1 1 1 0 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00865 Chy_Chr09 FPKM 7.006905 7.27935 17.381056 17.602179 12.755132 12.943803 12.810868 4.420341 4.651171 4.025838