Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00867 ATGAGCAGCGAAGTCATGGGAGATGGCCGGAGGCGGGCCTTAGCGCTGCAACTTCTTGACCTTGTACGTGACTTTGTTCTGATGTCAGGGAGGTCGATCGCTGGCGCTGGAGACGCTATGAAGAAAGATTGCACCAATCTCATTCGTCGGATTGCCCTCCTGGTCCATCTGGCGGAGGAGATCACAAACTTCTGCAGTGGCAGCTGGGACAATTTTGAGAAATCGAATGATGATGGGTCTTCTTCTTCTTTTTCTTCTTGGTTGGATTGCCTTTCGGAAGTGGTTGGAGCAATTCAGGCGGCAAAGCGGCTTCTGTACACGGCTTTGACTTTCTCTGCATACGACGAGGAGGGTTGTGTGACTTCGACGGAGGAAGCTACCAAAAAATTGGTTCTACAATTCAAGCATGTGACAACAAGATTGGAAACTGCACTTTCAAATCTGCCATATGATAAATTTTGTGTCTCAGACGAAGTACAAGAACAGGTTGATTTGGTTAGAGCTCAATTGAGGAGAGCATCACACAAGTATGAATCTATGTCTAATCCTGCAGAAAAGAAGCTTCAAGCAAGAAGTTCCATAAAATGGATGATCAATAATGATGTCAGGAGCATGTCTAGCGTTGATGATGGAGATGAGTCTCAACATCGTCCTCGAAACCGCGATTATCTGACTAGTCTCGATTCGGTGAATTCTTGTTTTGATGAGTGTTCAAGTGTTGTTAATTCTGATATGGAAGATGTTGTAGCCAGCAAGAGCCAAGATGAGGTTAAGAAGCCTCGTGAAATTGAAATTCCTGAAAACTTCTTGTGCCCCATTTCCTATGAGTTGATGTTGGATCCCGTCATCGTCTCGACGGGACAGACATATGAAAGATCCAACATACAAAATTGGATAGACAGAGGAAATAGAATATGTCCAAAAACTCAGGAGCAGCTCCAAGCACTAATCCTCACTCCAAATTTTATAATGAGAAAACTAATATTTGAATGGTGTGAAGAGCACAATGTGAAGCTAGAGGAAGGACTAACCAACAAGAAACTTAAGAAGTGTAGATCATTTGAAGACGACTGCCGAAGGACTCCTCTGCCGATCAATACTCTGGTTCGACACCTCTCATTTGGGTCGGTTCAAGAGCAAAAGATAGCCGTGGCGGAGATCCGACAGCTATCGAAAAGCAGCTCAGATCATAGAGTTGAAATAGCAGAAGCAGGAGCAATCCCACAGCTTGTTAACCTTTTAACTTCAAAAGACGTTATAACACAAGAAAATGCAATTTCTTGCATTCTTAACCTTTCACTTCACGAGCAAAACAAGAGACTTATTTTGCTTTCTGGTGCAGTTTCATACATTTCCCAAGTCCTCAAAGTTGGGAGCATGGAAGGGAGAGAATGTGCAGCTGCGACGATTTACAGTTTGTCGTTAGCCGATGAGAACAAGGCAGTAATCGGGGCTTCGGATGTGATACCAGACTTAATAGAAATTCTCGACATCGGTAGCCCGAGAGGGCAGAAAGACGCTGCAGGAGCTCTATTGAATTTGTGCATGTACCAAGGGAACAAGGGCAGGGCTTTGAAAGCTGGGATTGTCAAACCATTGTTGAAAATGCTCTCTGATTCAAATGGTTCTTTGGTTGATGATGCTCTCTATATAATGTCGATTCTTTGCGGCCATCCGGATGCAAAAGCTACAGTGGGGAATGCAAATTCACTGCTTGTTTTGACTGATGTTTTGAAGACAGGGTCGCCTCGCAGCAAGGAGAATGCAGCTGCTGTTCTGCTTGCATTCTGCAAGGGAGATAGGGAGAAGCTGGAATGGTTGACAAGGATCGGCGCGATTGCACCTTTGATGAAACTTGGGGAGAACGGCACGGGGAGAGCAAGGCGAAAGGCTGCTACATTGTTGGACCAACTCAGAAAATCATGA 1926 44.76 MSSEVMGDGRRRALALQLLDLVRDFVLMSGRSIAGAGDAMKKDCTNLIRRIALLVHLAEEITNFCSGSWDNFEKSNDDGSSSSFSSWLDCLSEVVGAIQAAKRLLYTALTFSAYDEEGCVTSTEEATKKLVLQFKHVTTRLETALSNLPYDKFCVSDEVQEQVDLVRAQLRRASHKYESMSNPAEKKLQARSSIKWMINNDVRSMSSVDDGDESQHRPRNRDYLTSLDSVNSCFDECSSVVNSDMEDVVASKSQDEVKKPREIEIPENFLCPISYELMLDPVIVSTGQTYERSNIQNWIDRGNRICPKTQEQLQALILTPNFIMRKLIFEWCEEHNVKLEEGLTNKKLKKCRSFEDDCRRTPLPINTLVRHLSFGSVQEQKIAVAEIRQLSKSSSDHRVEIAEAGAIPQLVNLLTSKDVITQENAISCILNLSLHEQNKRLILLSGAVSYISQVLKVGSMEGRECAAATIYSLSLADENKAVIGASDVIPDLIEILDIGSPRGQKDAAGALLNLCMYQGNKGRALKAGIVKPLLKMLSDSNGSLVDDALYIMSILCGHPDAKATVGNANSLLVLTDVLKTGSPRSKENAAAVLLAFCKGDREKLEWLTRIGAIAPLMKLGENGTGRARRKAATLLDQLRKS* 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11403672 11407648 + Chy9G165830.1 Chy09g00867 233764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00867 641 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 11 22 640 - -
Chy09g00867 641 ProSiteProfiles U-box domain profile. 264 338 IPR003613 GO:0004842|GO:0016567
Chy09g00867 641 Gene3D - 463 641 IPR011989 -
Chy09g00867 641 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 350 IPR013083 -
Chy09g00867 641 Pfam U-box domain 265 336 IPR003613 GO:0004842|GO:0016567
Chy09g00867 641 SMART Ubox_2 268 331 IPR003613 GO:0004842|GO:0016567
Chy09g00867 641 SUPERFAMILY RING/U-box 261 338 - -
Chy09g00867 641 Gene3D - 364 461 IPR011989 -
Chy09g00867 641 Coils Coil 156 176 - -
Chy09g00867 641 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 405 447 IPR000225 GO:0005515
Chy09g00867 641 SUPERFAMILY ARM repeat 365 638 IPR016024 -
Chy09g00867 641 PANTHER U BOX DOMAIN-CONTAINING 22 640 - -
Chy09g00867 641 CDD RING-Ubox_PUB 269 311 IPR045210 -
Chy09g00867 641 Pfam Armadillo/beta-catenin-like repeat 394 433 IPR000225 GO:0005515
Chy09g00867 641 SMART arm_5 517 557 IPR000225 GO:0005515
Chy09g00867 641 SMART arm_5 435 475 IPR000225 GO:0005515
Chy09g00867 641 SMART arm_5 394 434 IPR000225 GO:0005515
Chy09g00867 641 SMART arm_5 476 516 IPR000225 GO:0005515
Chy09g00867 641 SMART arm_5 558 598 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00867 Chy-Chr9:11403672 Chy10g01301 Chy-Chr10:17453715 6.30E-129 dispersed
Chy09g00867 Chy-Chr9:11403672 Chy12g00185 Chy-Chr12:2245357 2.25E-132 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00867 - - cmax:111489474 954.125