Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00883 ATGCATAAAAGCACCACTTCTGCGTCGAATACTATTGCTGCTGCGACTACTATGTCATCGTCGTCGCAGCTCAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAATTCACCAATCTTTGCTCCAAAGCAATCCGTGCCGGTCTCTCTTCCAATGACCCTCTATGGTGACTCGACCCACGCGGATTCATCAATCTCGGCTTCAAAATCGATAAACAATCATTTCTATCAAACGCGCGTCGTACAAGATCACCAGGAAATGGTTAATCGCCATAGCCTCTGTCTCACTCAGCTTCGAGAAGCAACCGAAGAAGCCGATGCTCTTCGACAAGAGAATATCCACCTCAGAAGTATTAATCACGAGCTAAGCAAACACCTCAGCCTTCTGATCCAGGCTTCGGTTCAGAAACAGTACGGCTCCTCCGATCATGCTCCTCCGTTTAATTTTGCGGAAGGATTCCGCGGACTCAGTCTAGCAGAGAAGGGAGCAAGCAGTTCGGCATGGGAGGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGTGGAAGGGTAGAGGGAGTTGAGGTGGAGAGATTTTCGCTCCCGAAGAGCATCTCCGTGAGATCCAATGGATACTTGAAAATGGCACAAACCGGAACCAGCCAGGGCGGAAAGATCCGCGCCTCATCTCGCCCCAGAACTGCAAGTCCTGTCAAAGTTACGCAGAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTAGAACTTGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTTTGCAACAAATGGCAGGAAACAGGCAGCTGCCCCTATGGAGACCACTGCCAGTTCGCCCATGGAATAGAGGAGCTTCGGCCTGTGATCCGCCACCCCCGCTACAAGACAGAAGTCTGCCGGATGGTCCTCGCCGGAGTTGTCTGCCCTTATGGTCACCGCTGCCACTTCCGCCATGCTCTCACCGACCAGGAAAGGCTCATGGGGTCACTCAAGCCAACCTGCAGGACCTCCACCACCCCTAAGCTGGACAGGTGA 1056 51.99 MHKSTTSASNTIAAATTMSSSSQLKSQLQTNDVYASLYNSPIFAPKQSVPVSLPMTLYGDSTHADSSISASKSINNHFYQTRVVQDHQEMVNRHSLCLTQLREATEEADALRQENIHLRSINHELSKHLSLLIQASVQKQYGSSDHAPPFNFAEGFRGLSLAEKGASSSAWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQTGTSQGGKIRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGSLKPTCRTSTTPKLDR* 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11608956 11611272 - Chy9G165990.1 Chy09g00883 233780

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00883 351 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 56 339 - -
Chy09g00883 351 SUPERFAMILY CCCH zinc finger 296 330 IPR036855 GO:0046872
Chy09g00883 351 SUPERFAMILY CCCH zinc finger 259 294 IPR036855 GO:0046872
Chy09g00883 351 SMART c3hfinal6 262 289 IPR000571 GO:0046872
Chy09g00883 351 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Chy09g00883 351 Gene3D - 256 295 - -
Chy09g00883 351 Gene3D - 296 332 - -
Chy09g00883 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 263 288 IPR000571 GO:0046872
Chy09g00883 351 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Chy09g00883 351 PANTHER CCCH ZINC FINGER/TIS11-RELATED 56 339 IPR045877 GO:0003729
Chy09g00883 351 Coils Coil 101 121 - -
Chy09g00883 351 ProSiteProfiles Zinc finger C3H1-type profile. 262 290 IPR000571 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00883 K18753 ZFP36L; butyrate response factor - csv:101203274 661.373
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00883 Chy-Chr9:11608956 Chy01g02008 Chy-Chr1:25038658 4.27E-06 dispersed
Chy01g01148 Chy-Chr1:13414821 Chy09g00883 Chy-Chr9:11608956 1.30E-08 transposed
Chy04g00106 Chy-Chr4:982987 Chy09g00883 Chy-Chr9:11608956 5.67E-07 transposed
Chy05g01333 Chy-Chr5:17456296 Chy09g00883 Chy-Chr9:11608956 2.09E-07 transposed
Chy03g00091 Chy-Chr3:878686 Chy09g00883 Chy-Chr9:11608956 1.90E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g371 . . . . Bpe13g01048 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0797 Cone19ag0802 . . . Csa05g02054 . . . . . . . . . Bma06g01092 . . Cmo15g00971 . Cma15g00931 . Car15g00875 Cpe13g00388 . Bhi12g00856 . . . Hepe02g2686 . Lcy10g1463 Cla01g00581 Cam01g0608 Cec01g0599 Cco01g0622 Clacu01g0600 Cmu01g0573 Cre09g1932 Lsi09g00631 Csa05g01229 Chy09g00883 Cme09g01416
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g00386 . 85 563 C3H Transcription Factor Family AT2G31510 73.7 7.6e-217 750.0
Chy05g00713 . 83 392 C3H Transcription Factor Family AT2G31510 76.8 1.5e-156 549.7
Chy05g00715 . 2 167 C3H Transcription Factor Family AT2G31510 76.0 2.8e-62 236.5
Chy03g00386 . 69 556 C3H Transcription Factor Family AT2G31770 55.7 1.3e-161 566.6
Chy05g00713 . 52 392 C3H Transcription Factor Family AT2G31770 53.4 1.9e-115 413.3
Chy05g00715 . 1 126 C3H Transcription Factor Family AT2G31770 65.9 1.1e-41 168.3
Chy03g00386 . 69 563 C3H Transcription Factor Family AT2G31760 54.7 2.8e-161 565.5
Chy05g00713 . 66 392 C3H Transcription Factor Family AT2G31760 55.2 6.7e-115 411.4
Chy05g00715 . 2 126 C3H Transcription Factor Family AT2G31760 65.6 5.8e-42 169.1
Chy08g00981 . 13 171 C3H Transcription Factor Family AT5G06490 54.2 2.6e-46 182.2
Chy08g00981 . 13 171 C3H Transcription Factor Family AT5G06490 54.2 2.6e-46 182.2
Chy09g00182 . 1 222 C3H Transcription Factor Family AT3G02290 61.7 1.3e-73 273.1
Chy02g01958 . 1 306 C3H Transcription Factor Family AT1G11020 74.8 4.1e-134 474.6
Chy04g00782 . 62 220 C3H Transcription Factor Family AT1G50440 75.6 9.0e-67 250.4
Chy08g00384 . 5 330 C3H Transcription Factor Family AT5G08750 57.5 1.8e-98 356.3
Chy05g01158 . 1 419 C3H Transcription Factor Family AT3G16090 73.2 3.3e-167 585.1
Chy03g00264 . 31 186 C3H Transcription Factor Family AT1G22510 66.0 2.6e-54 208.8
Chy09g00182 . 1 221 C3H Transcription Factor Family AT5G38895 55.4 2.8e-69 259.2
Chy03g01490 . 37 248 C3H Transcription Factor Family AT1G19310 66.4 1.2e-79 293.1
Chy02g00970 . 10 194 C3H Transcription Factor Family AT1G19310 60.3 4.2e-61 231.5
Chy03g00264 . 35 186 C3H Transcription Factor Family AT1G72175 66.4 2.6e-51 198.4
Chy02g00694 . 9 323 C3H Transcription Factor Family AT2G22120 82.6 8.6e-157 550.1
Chy03g00857 . 6 166 C3H Transcription Factor Family AT5G07040 60.2 1.3e-43 172.9
Chy02g02379 . 1 389 C3H Transcription Factor Family AT1G18470 76.1 9.3e-179 623.2
Chy09g00883 . 83 301 C3H Transcription Factor Family AT1G68200 51.7 1.2e-50 197.2
Chy03g00386 . 69 556 C3H Transcription Factor Family AT2G31770 55.7 1.3e-161 566.6
Chy05g00713 . 52 392 C3H Transcription Factor Family AT2G31770 53.4 1.9e-115 413.3
Chy05g00715 . 1 126 C3H Transcription Factor Family AT2G31770 65.9 1.1e-41 168.3
Chy03g00386 . 69 563 C3H Transcription Factor Family AT2G31760 54.7 2.8e-161 565.5
Chy05g00713 . 66 392 C3H Transcription Factor Family AT2G31760 55.2 6.7e-115 411.4
Chy05g00715 . 2 126 C3H Transcription Factor Family AT2G31760 65.6 5.8e-42 169.1
Chy01g01124 . 46 304 C3H Transcription Factor Family AT5G55970 62.9 4.1e-94 341.7
Chy01g01123 . 46 273 C3H Transcription Factor Family AT5G55970 69.4 9.1e-94 340.5
Chy08g00384 . 5 330 C3H Transcription Factor Family AT5G63780 54.7 7.2e-95 344.4
Chy04g01788 . 1 424 C3H Transcription Factor Family AT3G58030 54.1 2.3e-108 389.4
Chy01g01124 . 35 383 C3H Transcription Factor Family AT4G26580 55.1 4.0e-108 388.3
Chy01g01123 . 39 328 C3H Transcription Factor Family AT4G26580 58.9 2.8e-101 365.5
Chy08g00549 . 28 499 C3H Transcription Factor Family AT5G01960 68.9 9.7e-168 586.6
Chy10g00294 . 1 485 C3H Transcription Factor Family AT5G01960 57.4 1.3e-151 533.1
Chy11g00731 CCT 101 254 C3H Transcription Factor Family AT2G04240 57.5 1.2e-41 166.4
Chy01g00540 CCT 1 149 C3H Transcription Factor Family AT2G04240 56.5 1.0e-37 153.3
Chy05g00164 . 66 277 C3H Transcription Factor Family AT5G19430 55.8 1.3e-58 223.4
Chy07g01104 . 130 584 C3H Transcription Factor Family AT5G45290 50.9 7.7e-101 364.8
Chy05g00164 . 73 277 C3H Transcription Factor Family AT5G12310 63.2 9.9e-59 223.8
Chy02g02276 . 71 362 C3H Transcription Factor Family AT5G05810 53.8 2.2e-76 283.1
Chy03g00162 . 55 213 C3H Transcription Factor Family AT5G05830 67.9 3.6e-59 224.9
Chy04g02201 . 70 231 C3H Transcription Factor Family AT5G05830 61.7 4.1e-55 211.5
Chy09g00182 . 1 222 C3H Transcription Factor Family AT5G15790 58.8 1.2e-71 266.5
Chy03g00134 . 1 272 C3H Transcription Factor Family AT3G55530 79.9 1.4e-114 409.5
Chy01g01625 . 1 273 C3H Transcription Factor Family AT1G63900 76.3 3.5e-118 421.4
Chy06g00301 . 10 394 C3H Transcription Factor Family AT2G44580 53.4 7.6e-119 424.1
Chy03g01490 . 46 171 C3H Transcription Factor Family AT1G74990 59.8 8.6e-41 163.3
Chy07g00297 . 4 311 C3H Transcription Factor Family AT5G20910 57.5 1.2e-95 346.7
Chy05g01158 . 119 420 C3H Transcription Factor Family AT1G65040 68.0 4.1e-110 394.8
Chy03g01490 . 27 250 C3H Transcription Factor Family AT2G23780 57.0 1.2e-68 256.5
Chy02g00970 . 10 196 C3H Transcription Factor Family AT2G23780 61.5 4.1e-64 241.5
Chy04g01670 . 1 318 C3H Transcription Factor Family AT3G10810 53.6 3.7e-78 289.3
Chy09g01247 . 1 171 C3H Transcription Factor Family AT1G63840 58.2 1.8e-48 189.1
Chy09g00829 . 9 346 C3H Transcription Factor Family AT1G68070 64.0 5.7e-118 421.0
Chy06g01970 . 47 376 C3H Transcription Factor Family AT1G68070 51.1 1.2e-86 317.0
Chy07g00412 . 4 181 C3H Transcription Factor Family AT1G76410 56.1 1.9e-51 199.1
Chy06g02293 . 88 218 C3H Transcription Factor Family AT1G76410 60.1 5.5e-43 171.0
Chy03g01171 . 1 410 C3H Transcription Factor Family AT1G80400 54.0 7.7e-114 407.5
Chy06g02293 . 83 209 C3H Transcription Factor Family AT2G17450 59.1 4.5e-37 151.4
Chy03g00386 . 85 563 C3H Transcription Factor Family AT2G31510 73.7 7.6e-217 750.0
Chy05g00713 . 83 392 C3H Transcription Factor Family AT2G31510 76.8 1.5e-156 549.7
Chy05g00715 . 2 167 C3H Transcription Factor Family AT2G31510 76.0 2.8e-62 236.5
Chy08g00981 . 10 170 C3H Transcription Factor Family AT2G35910 62.0 2.0e-52 202.6
Chy06g01203 . 61 318 C3H Transcription Factor Family AT2G41980 80.2 3.2e-128 454.9
Chy06g01204 . 62 319 C3H Transcription Factor Family AT2G41980 80.2 4.1e-128 454.5
Chy10g01356 . 71 345 C3H Transcription Factor Family AT2G41980 76.7 4.6e-127 451.1
Chy05g00073 . 61 384 C3H Transcription Factor Family AT2G41980 67.0 1.6e-124 442.6
Chy11g01883 . 43 301 C3H Transcription Factor Family AT2G41980 75.3 1.8e-123 439.1
Chy06g00616 . 365 639 C3H Transcription Factor Family AT3G06140 62.0 7.8e-94 340.9
Chy04g02071 . 33 329 C3H Transcription Factor Family AT3G09770 58.7 7.5e-86 314.3
Chy02g02573 CCT 58 352 C3H Transcription Factor Family AT3G47990 72.1 3.4e-127 451.4
Chy12g01273 CCT 35 320 C3H Transcription Factor Family AT3G47990 70.3 1.6e-119 426.0
Chy03g01343 . 105 213 C3H Transcription Factor Family AT1G72220 64.5 7.0e-38 155.2
Chy07g00412 . 4 186 C3H Transcription Factor Family AT1G20823 57.5 2.2e-53 205.7
Chy06g02293 . 86 218 C3H Transcription Factor Family AT1G20823 62.0 2.8e-45 178.7
Chy06g02255 . 20 236 C3H Transcription Factor Family AT5G66070 74.7 2.9e-75 278.5
Chy04g02109 . 1 262 C3H Transcription Factor Family AT5G02750 52.7 1.0e-64 243.8
Chy02g02379 . 5 442 C3H Transcription Factor Family AT1G73950 73.1 4.0e-185 644.4
Chy09g00102 . 364 504 C3H Transcription Factor Family AT1G33480 53.9 6.8e-39 157.9
Chy09g00829 . 6 243 C3H Transcription Factor Family AT2G01735 61.3 1.8e-73 272.7
Chy06g01970 . 60 269 C3H Transcription Factor Family AT2G01735 52.8 1.2e-51 200.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008528 1 2 0 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18492 PF00642 zf-CCCH 5.40E-12 CL0537 Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00883 Chy_Chr09 FPKM 16.908936 22.759722 5.198001 4.665068 4.641692 6.089753 4.991126 1.347806 1.464231 1.514836