Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy09g00883 | ATGCATAAAAGCACCACTTCTGCGTCGAATACTATTGCTGCTGCGACTACTATGTCATCGTCGTCGCAGCTCAAGTCGCAGCTTCAAACAAACGATGTTTATGCTTCCCTCTATAATTCACCAATCTTTGCTCCAAAGCAATCCGTGCCGGTCTCTCTTCCAATGACCCTCTATGGTGACTCGACCCACGCGGATTCATCAATCTCGGCTTCAAAATCGATAAACAATCATTTCTATCAAACGCGCGTCGTACAAGATCACCAGGAAATGGTTAATCGCCATAGCCTCTGTCTCACTCAGCTTCGAGAAGCAACCGAAGAAGCCGATGCTCTTCGACAAGAGAATATCCACCTCAGAAGTATTAATCACGAGCTAAGCAAACACCTCAGCCTTCTGATCCAGGCTTCGGTTCAGAAACAGTACGGCTCCTCCGATCATGCTCCTCCGTTTAATTTTGCGGAAGGATTCCGCGGACTCAGTCTAGCAGAGAAGGGAGCAAGCAGTTCGGCATGGGAGGATATTTCCGATGAGAGTCCGACGAGCGTAATGGAGGGTGGAAGGGTAGAGGGAGTTGAGGTGGAGAGATTTTCGCTCCCGAAGAGCATCTCCGTGAGATCCAATGGATACTTGAAAATGGCACAAACCGGAACCAGCCAGGGCGGAAAGATCCGCGCCTCATCTCGCCCCAGAACTGCAAGTCCTGTCAAAGTTACGCAGAAGGTGTACGTGCAAGGAGTGAAAGAAGAGGAAAAGCCACTAGAACTTGAGGTGTACAACCAGGGCATGTTCAAAACCGAGCTTTGCAACAAATGGCAGGAAACAGGCAGCTGCCCCTATGGAGACCACTGCCAGTTCGCCCATGGAATAGAGGAGCTTCGGCCTGTGATCCGCCACCCCCGCTACAAGACAGAAGTCTGCCGGATGGTCCTCGCCGGAGTTGTCTGCCCTTATGGTCACCGCTGCCACTTCCGCCATGCTCTCACCGACCAGGAAAGGCTCATGGGGTCACTCAAGCCAACCTGCAGGACCTCCACCACCCCTAAGCTGGACAGGTGA | 1056 | 51.99 | MHKSTTSASNTIAAATTMSSSSQLKSQLQTNDVYASLYNSPIFAPKQSVPVSLPMTLYGDSTHADSSISASKSINNHFYQTRVVQDHQEMVNRHSLCLTQLREATEEADALRQENIHLRSINHELSKHLSLLIQASVQKQYGSSDHAPPFNFAEGFRGLSLAEKGASSSAWEDISDESPTSVMEGGRVEGVEVERFSLPKSISVRSNGYLKMAQTGTSQGGKIRASSRPRTASPVKVTQKVYVQGVKEEEKPLELEVYNQGMFKTELCNKWQETGSCPYGDHCQFAHGIEELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTDQERLMGSLKPTCRTSTTPKLDR* | 352 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 11608956 | 11611272 | - | Chy9G165990.1 | Chy09g00883 | 233780 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy09g00883 | 351 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 15 | 56 | 339 | - | - | |
| Chy09g00883 | 351 | SUPERFAMILY | CCCH zinc finger | 296 | 330 | IPR036855 | GO:0046872 | |
| Chy09g00883 | 351 | SUPERFAMILY | CCCH zinc finger | 259 | 294 | IPR036855 | GO:0046872 | |
| Chy09g00883 | 351 | SMART | c3hfinal6 | 262 | 289 | IPR000571 | GO:0046872 | |
| Chy09g00883 | 351 | SMART | c3hfinal6 | 300 | 327 | IPR000571 | GO:0046872 | |
| Chy09g00883 | 351 | Gene3D | - | 256 | 295 | - | - | |
| Chy09g00883 | 351 | Gene3D | - | 296 | 332 | - | - | |
| Chy09g00883 | 351 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 263 | 288 | IPR000571 | GO:0046872 | |
| Chy09g00883 | 351 | ProSiteProfiles | Zinc finger C3H1-type profile. | 300 | 328 | IPR000571 | GO:0046872 | |
| Chy09g00883 | 351 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 56 | 339 | IPR045877 | GO:0003729 | |
| Chy09g00883 | 351 | Coils | Coil | 101 | 121 | - | - | |
| Chy09g00883 | 351 | ProSiteProfiles | Zinc finger C3H1-type profile. | 262 | 290 | IPR000571 | GO:0046872 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy09g00883 | Chy-Chr9:11608956 | Chy01g02008 | Chy-Chr1:25038658 | 4.27E-06 | dispersed | |
| Chy01g01148 | Chy-Chr1:13414821 | Chy09g00883 | Chy-Chr9:11608956 | 1.30E-08 | transposed | |
| Chy04g00106 | Chy-Chr4:982987 | Chy09g00883 | Chy-Chr9:11608956 | 5.67E-07 | transposed | |
| Chy05g01333 | Chy-Chr5:17456296 | Chy09g00883 | Chy-Chr9:11608956 | 2.09E-07 | transposed | |
| Chy03g00091 | Chy-Chr3:878686 | Chy09g00883 | Chy-Chr9:11608956 | 1.90E-60 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 18492 | PF00642 | zf-CCCH | 5.40E-12 | CL0537 | Chy | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy09g00883 | K18753 | - | csv:101203274 | 661.373 |