Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00916 ATGGATTTTTCTGATGCTTCTTCGTCTTCCCATCGTTCCACTCTTTCCGACGACGAGCTTCTTCTGGCATCTCGATACCCCAAGAAGCGAGCCGGGAGAAAGAAGTTTAAAGAAACTCGTCATCCTATCTACCGTGGTGTGCGACTGAGGAATTCTGGTAAGTGGGTTTGTGAAGTTAGAGAGCCTAATAAGAAGACACGGATTTGGCTTGGAACTTTCCCCACTGCTGAGATGGCTGCTCGAGCTCATGATGTCGCTGCCATCGCTCTTAGGGGAAGGTCTGCTTGTCTTAATTTTGCTGACTCTGCTTCCACGCTACACATTCCGGCTAGTGTTGATCCTAAGGATATTCAGAGGGCTGCGGCGGAGGCTGCCGAGGCATTCCGGCCGCAGGGTGATGAGTTGACGCCGGCGGTGGTGGAAGAGGAGGGGTTTTATTTGGATGAGGAAGTGGAGTTTGGGATGCCCGGGTTGTTGACGGATATGGCGGAGGCAATGTTGTTGCCGCCGCCCAATTGTGTGGGGAATTACGACAATGACCACTTTGGGACTAATTCTATGGATTTTGATGCCGACATGTCGTTGTGGAGTTACTCCATTTGA 603 51.08 MDFSDASSSSHRSTLSDDELLLASRYPKKRAGRKKFKETRHPIYRGVRLRNSGKWVCEVREPNKKTRIWLGTFPTAEMAARAHDVAAIALRGRSACLNFADSASTLHIPASVDPKDIQRAAAEAAEAFRPQGDELTPAVVEEEGFYLDEEVEFGMPGLLTDMAEAMLLPPPNCVGNYDNDHFGTNSMDFDADMSLWSYSI* 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 11941196 11941798 - Chy9G166320.1 Chy09g00916 233813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00916 200 ProSiteProfiles AP2/ERF domain profile. 43 100 IPR001471 GO:0003700|GO:0006355
Chy09g00916 200 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 200 IPR045277 GO:0003700
Chy09g00916 200 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 3 200 - -
Chy09g00916 200 SMART rav1_2 43 106 IPR001471 GO:0003700|GO:0006355
Chy09g00916 200 Gene3D AP2/ERF domain 43 101 IPR036955 GO:0003700|GO:0006355
Chy09g00916 200 CDD AP2 42 102 IPR001471 GO:0003700|GO:0006355
Chy09g00916 200 Pfam AP2 domain 42 92 IPR001471 GO:0003700|GO:0006355
Chy09g00916 200 SUPERFAMILY DNA-binding domain 43 102 IPR016177 GO:0003677
Chy09g00916 200 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Chy09g00916 200 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy06g00907 Chy09g00916 CCT
Chy06g00907 Chy09g00916 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00916 Chy-Chr9:11941196 Chy09g01184 Chy-Chr9:14035460 1.35E-63 dispersed
Chy11g01758 Chy-Chr11:23975040 Chy09g00916 Chy-Chr9:11941196 2.61E-31 dispersed
Chy09g00916 Chy-Chr9:11941196 Chy06g00907 Chy-Chr6:6649941 6.04E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18496 PF00847 AP2 1.50E-14 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00916 - - csv:101207745 387.111