Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00939 ATGACTGCACCAACATCGATCCACTTGTTTCGTCAGAATCACACAGCGGTAACTGTTGCTTTCCATCAGTTTGTTCAGACTATCAATGGGGTTAATCAACCCAGTGGTGCTCAGAGGAGGATTCGTGTTGTTAAAAGTAAGAAGAATGTGAAGAAACCTAATGTTCTTGAGGTTTCTTCTCCTTCTACTGATCCTAAAATCAGTGTCAGTACCAGTGGTTCACTCGCCTCTGAAACGAAGGCACGACCGAAGCGAAGGGAACTGGAAGAAAAGAAGAAGAAGGATAGGGAGGTTAACGTGCAAGGGATTTATCAGAATGGGGATCCTCTTGGGCGGAGAGAGCTGGGGAAGAGCGTGGTTCGGTGGATTGGGCTGGCCATGCGAGCTATGGCTTCCGATTTTGCTGCTGCGGAGGTTCAGGGAGATTTTTCTGAGCTCCGGCAGCGGATGGGACCGGGGCTTACTTTTGTGATTCAAGCTCAGCCGTATTTGAATGCAGTGCCTATGCCTCTTGGACTTGAAGCTGTGTGTTTGAAAGCTTCTACTCATTATCCGACTCTCTTTGACCATTTCCAGAGGGAGCTTAGGGACGTTCTTCAAGATCTCCAACACCAATCGCTGTTTCTTGATTGGCGCGAAACTCAATCATGGAAGCTCCTCAAGGAGCTCGCTAATTCAGTTCAGCACAAAGCTATAGCGCGTAAGATAAGCGAGCCCAAGGTTGTTCAAGGTGCTTTAGGCATGGACCTGAAGAAGGCCAAGGCTATACAGAACAGGATCGACGAGTTTGCAAACCGTATGTCTGAATTACTTCGCATTGAGAGAGATTCTGAATTGGAGTTTACACAAGAGGAGTTGAATGCTGTTCCTACACCAGATGAGGGTTCAGATAATTCCAAACCTATCGAGTTCTTAGTCAGCCATGGCCAAGCTCAGCAAGAACTCTGTGACACTATATGCAATTTGAATGCAGTTAGCACGTCTACAGGATTGGGGGGGATGCATTTGGTATTATTCAGGGTTGAAGGAAGCCATAGATTACCGCCTACAACCCTTTCACCGGGAGATATGGTTTGTGTGAGAGTTTGCGATAGCAGGGGTGCTGGTGCAACTTCTTGCATGCAAGGGTTTGTGAACAATTTGGGGGATGATGGATGCAGCATCACTGTAGCTCTAGAATCTCGTCATGGCGACCCTACCTTTTCTAAGCTCTTTGGGAAGACTGTGCGTATTGATCGTATCCCTGGATTAGCTGATACTCTCACTTATGAGCGCAACTGTGAAGCATTGATGTTGCTTCAGAAAAATGGTTTGCACAAAAAGAATCCTTCTATTGCTGTAGTGGCTACATTATTTGGTGATAAAGAAGACATCAAGTGGATGGAAGATAATAACTTGATAGGTCTAGCTGATACCAACCTGGATGGCATAGTTCTCAATGGAGATTTAGATGATTCACAAAAGAGCGCAATTTCACGTGCTTTGAATAAAAAGCGGCCCATATTGATAATCCAAGGGCCGCCTGGTACTGGAAAAACAGGTCTGCTAAAGGAGCTTATTGCACTTGCTGTTCAGCAAGGTGAAAGAGTGCTTGTAACTGCACCTACTAATGCAGCTGTTGACAACATGGTCGAAAAACTCTCAAACATTGGGATAAACATTGTTAGGGTAGGAAATCCAGCACGGATATCTTCAAGTGTTGCGTCCAAGTCTTTGGCTGAAATTGTGAACTCTGAACTATCAAGTTTTAGAACAGATATTGAAAGGAAGAAGGCAGATTTAAGGAAAGACTTGAGACAATGTTTAAAGGATGACTCATTGGCTGCTGGCATACGCCAGCTTCTGAAGCAGCTTGGGAAGTCATTGAAAAAGAAAGAGAAGGAAACTGTGAAGGAAGTACTCTCAAATGCCCAAGTTGTTCTTGCTACCAACACTGGAGCAGCTGATCCTTTAATTCGGAAGTTGGAGAAATTTGACCTAGTTGTTATAGATGAGGCAGGCCAGGCAATTGAACCAGCTTGCTGGATTCCAATATTGCAGGGACGCCGTTGTATTCTGGCAGGCGATCAGTGCCAACTTGCTCCTGTGATTTTGTCTAGAAAAGCCTTGGAAGGTGGTCTTGGAGTGTCATTGCTGGAGCGAGCTGCAACCTTGCATGAGGGGGCTTTAACTACAATGTTAACAATACAATACAGAATGAACGATGCAATAGCTAGTTGGGCTTCAAAGGAAATGTATGATGGAAAATTGAAGTCCTCACCAACAGTCTCTTCTCATCTTCTTATTAACTCTCCTTTTGTCAAGCCAACATGGATAACTCAGTGTCCCTTGCTGTTGCTTGACACTAGAATGCCATACGGTAGTCTGTCAGTTGGCTGTGAAGAGCACTTAGATCCATCTGGTACAGGCTCATTATATAATGAAGGCGAGGCAGATATTGTCGTGCAGCATGTCTGCGCATTGATTTATTCTGGTGTCAGCCCAAGAGCAATCGCAGTGCAATCTCCTTATGTTGCTCAGGTACAGCTATTGAGGAACAGGCTTGATGAAATTCCTGAATCTGCTGGTATTGAGGTAGCGACTATTGATAGCTTCCAAGGCCGAGAGGCGGATGCGGTGATCATATCAATGGTAAGGTCAAACAATCTCGGAGCTGTTGGATTTTTGGGAGACAGCAGGCGGATGAATGTGGCCATAACAAGGACAAGAAAACACATAGCACTAGTCTGTGATAGCTCGACGATATGTCAAAACACATTCTTGGCGAGGCTATTACGCCATATACGTTATTTTGGAAGAGTGAAGCATGCCGAACCAGGTAACTTTGGAGGATCTGGTCTTGGAATGAATCCAATGTTGCCATCCATCAATTAG 2874 45.02 MTAPTSIHLFRQNHTAVTVAFHQFVQTINGVNQPSGAQRRIRVVKSKKNVKKPNVLEVSSPSTDPKISVSTSGSLASETKARPKRRELEEKKKKDREVNVQGIYQNGDPLGRRELGKSVVRWIGLAMRAMASDFAAAEVQGDFSELRQRMGPGLTFVIQAQPYLNAVPMPLGLEAVCLKASTHYPTLFDHFQRELRDVLQDLQHQSLFLDWRETQSWKLLKELANSVQHKAIARKISEPKVVQGALGMDLKKAKAIQNRIDEFANRMSELLRIERDSELEFTQEELNAVPTPDEGSDNSKPIEFLVSHGQAQQELCDTICNLNAVSTSTGLGGMHLVLFRVEGSHRLPPTTLSPGDMVCVRVCDSRGAGATSCMQGFVNNLGDDGCSITVALESRHGDPTFSKLFGKTVRIDRIPGLADTLTYERNCEALMLLQKNGLHKKNPSIAVVATLFGDKEDIKWMEDNNLIGLADTNLDGIVLNGDLDDSQKSAISRALNKKRPILIIQGPPGTGKTGLLKELIALAVQQGERVLVTAPTNAAVDNMVEKLSNIGINIVRVGNPARISSSVASKSLAEIVNSELSSFRTDIERKKADLRKDLRQCLKDDSLAAGIRQLLKQLGKSLKKKEKETVKEVLSNAQVVLATNTGAADPLIRKLEKFDLVVIDEAGQAIEPACWIPILQGRRCILAGDQCQLAPVILSRKALEGGLGVSLLERAATLHEGALTTMLTIQYRMNDAIASWASKEMYDGKLKSSPTVSSHLLINSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPSGTGSLYNEGEADIVVQHVCALIYSGVSPRAIAVQSPYVAQVQLLRNRLDEIPESAGIEVATIDSFQGREADAVIISMVRSNNLGAVGFLGDSRRMNVAITRTRKHIALVCDSSTICQNTFLARLLRHIRYFGRVKHAEPGNFGGSGLGMNPMLPSIN* 958
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12151728 12158218 - Chy9G166550.1 Chy09g00939 233836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00939 957 SMART AAA_5 498 713 IPR003593 -
Chy09g00939 957 Gene3D - 731 939 IPR027417 -
Chy09g00939 957 MobiDBLite consensus disorder prediction 55 78 - -
Chy09g00939 957 Coils Coil 584 604 - -
Chy09g00939 957 Pfam AAA domain 483 699 IPR041677 GO:0004386
Chy09g00939 957 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 35 957 - -
Chy09g00939 957 CDD SF1_C_Upf1 733 929 IPR041679 -
Chy09g00939 957 Gene3D - 266 715 IPR027417 -
Chy09g00939 957 MobiDBLite consensus disorder prediction 55 96 - -
Chy09g00939 957 Coils Coil 253 273 - -
Chy09g00939 957 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 35 957 - -
Chy09g00939 957 MobiDBLite consensus disorder prediction 79 96 - -
Chy09g00939 957 SMART ultradead3 479 715 IPR014001 -
Chy09g00939 957 Pfam AAA domain 708 912 IPR041679 -
Chy09g00939 957 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 919 IPR027417 -
Chy09g00939 957 CDD DEXXQc_SMUBP2 483 732 - -
Chy09g00939 957 Gene3D - 286 417 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00939 - - - csv:101211099 1783.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01743 Chy-Chr4:23788890 Chy09g00939 Chy-Chr9:12151728 6.37E-124 dispersed
Chy06g00300 Chy-Chr6:2006618 Chy09g00939 Chy-Chr9:12151728 7.51E-40 dispersed
Chy09g00939 Chy-Chr9:12151728 Chy07g00700 Chy-Chr7:6807389 4.11E-32 dispersed
Chy09g00939 Chy-Chr9:12151728 Chy06g02112 Chy-Chr6:25330110 4.86E-61 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g241 . Blo16g01045 . Bda11g01124 Bpe13g01321 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g02069 . . . . . Bda11g01124 . . . Bma06g00779 . . . . Cma15g01420 . Car15g01282 Cpe13g00027 . Bhi12g00828 . . . . . Lcy10g0852 Cla01g00567 Cam01g0590 Cec01g0582 Cco01g0606 Clacu01g0585 Cmu01g0556 Cre09g1951 Lsi09g00615 . Chy09g00939 Cme09g01467
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011523 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00939 Chy_Chr09 FPKM 11.571099 10.943583 16.407642 13.514962 23.77803 22.724255 24.503094 27.703028 29.06344 29.521982