Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00944 ATGGTTCGTGGGAAAGTAGAAATGAAACGAATTGAAAATTCGACGAGTCGTCAGGTGACATTCTCAAAGAGAAGAAATGGCCTTTTGAAGAAAGCTTATGAATTATCTGTTCTTTGTGATGCTGAAGTTTCTGTCATCATTTTCTCCCAGAAAGGAAGACTCTATGAATTCTCAAGCTCCGACATGCAAAAGACAATCGAACGCTATCGTAAGTATGGGAAAGACGGACAAAGCAACCCTTTTCGATCAGAAGGATATATGCAGCAACTGAAGCAAGAAGCTGAGATGACTGCAAAGAAAATCGAACAACTTGAGAAATCCCAACAGAAGCTTTTAGGACGTGGGTTGGATTCTTGTTCTTTTGAGGAAATTCGAGAGATTGAAAGACAGTTGGTACTTAGCTTAACTCGTATCAGAGAAACTAAGGCTCAGCTATTCAAGGAGCAAAAAGAGAAGCTGATTGAAAAGGGGAAACTTCTTTTAGAAGAAAATCTAAAGTTATCTGCAAAGTGTGGTACTAAGCCATGGCAAGAAGAAGGTGTTGAAGGTGATGGAGGCATAAATATGATGAGTAATTTATGCAGCCAAAGTACTAATAGCCAAGCTTCTGATCATCACATGCAGACTGATTTGTTCATTGGATTGTCTTGCTCATAA 657 39.12 MVRGKVEMKRIENSTSRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGRLYEFSSSDMQKTIERYRKYGKDGQSNPFRSEGYMQQLKQEAEMTAKKIEQLEKSQQKLLGRGLDSCSFEEIREIERQLVLSLTRIRETKAQLFKEQKEKLIEKGKLLLEENLKLSAKCGTKPWQEEGVEGDGGINMMSNLCSQSTNSQASDHHMQTDLFIGLSCS* 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12199067 12211915 + Chy9G166600.1 Chy09g00944 233841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00944 218 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Chy09g00944 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Chy09g00944 218 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Chy09g00944 218 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Chy09g00944 218 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Chy09g00944 218 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Chy09g00944 218 SUPERFAMILY SRF-like 3 76 IPR036879 GO:0003677|GO:0046983
Chy09g00944 218 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Chy09g00944 218 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Chy09g00944 218 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy09g00944 218 Coils Coil 87 107 - -
Chy09g00944 218 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Chy09g00944 218 PANTHER MADS-BOX PROTEIN SOC1 1 215 - -
Chy09g00944 218 Pfam K-box region 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Chy09g00944 218 PANTHER MADS BOX PROTEIN 1 215 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy06g00898 Chy09g00944 CCT
Chy06g00898 Chy09g00944 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00944 Chy-Chr9:12199067 Chy11g01998 Chy-Chr11:25858106 5.33E-55 dispersed
Chy09g00944 Chy-Chr9:12199067 Chy06g00898 Chy-Chr6:6546436 1.20E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18497 PF01486 K-box 3.70E-19 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00944 - - csv:101212323 399.053