Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy09g00976 | ATGGAAGAGAAAGAGGGAGGAGTGGATTTCGGGTTTGCAGTAAAAGTAAGCCAAGCTACAGAGAGCTTCGGGATGATGGACACGAGACCTGAAAATTCAAGCACAGATGGTGAGACACCGCCGCAGCAGCCGCCGGCGAGTGTTCCAACGGCGGGGGCTGCCGATGGGAAGAAGAAAAGAGGGAGACCAAGAAAGTACCGTCCTGATGGGACTGTAGCTCCAACTTTGTCACCAATGCCGATTTCGTCATCGATTCCGCTGGCGGGAGAATTTGCGGGTTGGAAACGAGGAAGAGGACGGTCAGTAGAGTCTATCAAAAAGTCACGGAAGTTCGAGTATGAGATTCCAGGTAACAAGGTTGCCTTCTTTGCTGGAGCAGATTTCACACCTCACGTGATCACTGTTAATATTGGTGAGGATGTTAACTTGAAAGTCATGTCATTTTCTCAACAAGGATCTCGGGCTATTTGTATACTCTCTGCTAATGGTATGGTTTCAAATGTTACACTTCGGCAGTCAACATCGTCTGGGGGTACTTTAACATATGAGGGTCGATTTGAGATACTTTCATTGTCTGGATCATATATGCCTTCGGAAATTGGTGGAACAAAGAGCCGATCTGGAGGGATGAGTGTCTCTCTGGCTGGCCCAGATGGCCGAGTGATGGGCGGAGGACTTGCCGGAATGCTGATAGCAGCTGGTCCAGTGCAGGTGGTGGTGGGTAGTTTCCTGCCACCAGGTCACCAGCAAGAAAACAAACCAAGGAAGAGTAGGATGGAACCTACACTGAACGCAAGTTCGCCTCCAGCCAACATTCTTTCTGGTGAAGGGACAAATGAATTATTTGGAGGAGTGAAGCCCATAGTCGCATCTACTCTAAATGGAGATAGAACTGCTTCTTTAGACCCAACTCCACCTTTTAAAACTCCCCAAGTTAACGACAAATCACATTTTCCACAAGAATCAAGAGGTGTTCTCAACCATTCAAACCACGAGGTGACTGGTCTTGAGGTGAAGAAGATGACGAGTATGATCAAATTGAAGAAGCAGAAGATGAACAGAGTACTTGAAGTTGCCTCAGCAGCAAGTTCTAGAATGGAATCAGCCATGGCTACAATGGAAATTGGTTGCAATTACTACTTGAGATTGAAGAGAGAAGAATGA | 1164 | 46.99 | MEEKEGGVDFGFAVKVSQATESFGMMDTRPENSSTDGETPPQQPPASVPTAGAADGKKKRGRPRKYRPDGTVAPTLSPMPISSSIPLAGEFAGWKRGRGRSVESIKKSRKFEYEIPGNKVAFFAGADFTPHVITVNIGEDVNLKVMSFSQQGSRAICILSANGMVSNVTLRQSTSSGGTLTYEGRFEILSLSGSYMPSEIGGTKSRSGGMSVSLAGPDGRVMGGGLAGMLIAAGPVQVVVGSFLPPGHQQENKPRKSRMEPTLNASSPPANILSGEGTNELFGGVKPIVASTLNGDRTASLDPTPPFKTPQVNDKSHFPQESRGVLNHSNHEVTGLEVKKMTSMIKLKKQKMNRVLEVASAASSRMESAMATMEIGCNYYLRLKREE* | 388 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 12454527 | 12461700 | - | Chy9G166920.1 | Chy09g00976 | 233873 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy09g00976 | 387 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 130 | 243 | IPR005175 | - | |
| Chy09g00976 | 387 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 | 8 | 316 | - | - | |
| Chy09g00976 | 387 | ProSiteProfiles | PPC domain profile profile. | 125 | 266 | IPR005175 | - | |
| Chy09g00976 | 387 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 127 | 259 | - | - | |
| Chy09g00976 | 387 | MobiDBLite | consensus disorder prediction | 243 | 270 | - | - | |
| Chy09g00976 | 387 | MobiDBLite | consensus disorder prediction | 21 | 41 | - | - | |
| Chy09g00976 | 387 | CDD | DUF296 | 129 | 243 | IPR005175 | - | |
| Chy09g00976 | 387 | Gene3D | - | 130 | 261 | - | - | |
| Chy09g00976 | 387 | MobiDBLite | consensus disorder prediction | 21 | 79 | - | - | |
| Chy09g00976 | 387 | MobiDBLite | consensus disorder prediction | 296 | 329 | - | - | |
| Chy09g00976 | 387 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 8 | 316 | IPR039605 | GO:0003680 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy06g00871 | Chy-Chr6:6294210 | Chy09g00976 | Chy-Chr9:12454527 | 2.98E-109 | dispersed | |
| Chy06g00872 | Chy-Chr6:6298698 | Chy09g00976 | Chy-Chr9:12454527 | 2.27E-18 | dispersed | |
| Chy09g00976 | Chy-Chr9:12454527 | Chy09g01143 | Chy-Chr9:13662780 | 1.84E-79 | dispersed | |
| Chy11g00874 | Chy-Chr11:12170791 | Chy09g00976 | Chy-Chr9:12454527 | 2.93E-22 | dispersed | |
| Chy10g00178 | Chy-Chr10:4339040 | Chy09g00976 | Chy-Chr9:12454527 | 2.50E-83 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy09g00976 | - | - | csv:101211908 | 615.535 |