Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00982 ATGCCCAATTTCGAAAAGTTGCTTCTCAATGATAATCTTATCAATGATTCAGTATTACCTTCACTATGCCAATTGAAGAATTTGTTCGTTTTGGATCTTTCAAATAATAGGTTAACTGGAATTCTTCAAGCTTGTTTGTTGACTCTATATTTGTGTTATTTGGATTTGTCCTCAAACAACCTTTTTGGGACCTTTCCATATTCAGAAGGTAATCTTTCTTATATTGAAGAATTATACTTGAGAAACAATAATTTTGAGGGGTCCATGCCAATTGTATTGAAAAATTCTAAATTTTTGACTACATTAGATCTTGAAGGAAACAAGTTCTTTGGAAATATCCTCACATGGATAGGCAATAATCTTGAACGGTTGGCATTTTTAACACTACGAGGTAATTTGTTCAATGGTACTATTCCTTCAAATCTATGCAAACTCAGTCACTTGCAAATATTGGATCTTGCACACAATCAATTAGAAGGAGGCATTCCACCAAATCTTAGCAACTTTAATGAAATGACAGGAAGAAAAAGAAATGTTGATTCCGTCTATTGTGGAAATAGTTTGATTTGCGATGATAACATTGTTGAAAATTATGTAGTACAACGGATCAAATCAAGTGAGTTAAATTACACTAGGGTACAACTCAAAGGATTTTTGGTAAATATAGACCTCTCCAAAAATCATTTGGTTGGTTCCATTCCATGTGAGATAATTATGCTTAAAGGATTAATTGGATTGAATTTGTCTCACAATAATTTAGTCGGGACAATTCCTACTGAAATAGGAGAAATGGAAGTGTTAGAATCACTCGACCTATCTTTCAACCAACTTTCTGGACCAATTCCAAGAAGCATATCAAAACTAAGTTCGTTAGGCGTGTTGGTGTTATCTCACAACAATATTTCTGGAGAAATTCCTCGAGAAGGTCATCTCTCCACATTCAATGAAGCTTCAGGTTTTGATGGCAATCCATATCTATGCGGGGATCCACTTCCAACGAAATGTGCAATTGAGAATTCACTTGAGCCACAATTAAAAGATGAGGACAATTCGGATGAAGAGGAGGATAAATGGGAGAAATGGTTGCTTTACATGATGATAATTGTTGGATTTATAGTTGGATTTTGGGGAGTTGTGGGAAGTTTAATCTTGAAGAAGAGTTGGAGATATAAATATTTCAAGATTGTGGATGAGGCTTATTACAAGGTTCATGCAACAATTTGGGAGAGCATACAATTGCTTAAAGGAATCTGCATTCGCAAATGA 1266 34.6 MPNFEKLLLNDNLINDSVLPSLCQLKNLFVLDLSNNRLTGILQACLLTLYLCYLDLSSNNLFGTFPYSEGNLSYIEELYLRNNNFEGSMPIVLKNSKFLTTLDLEGNKFFGNILTWIGNNLERLAFLTLRGNLFNGTIPSNLCKLSHLQILDLAHNQLEGGIPPNLSNFNEMTGRKRNVDSVYCGNSLICDDNIVENYVVQRIKSSELNYTRVQLKGFLVNIDLSKNHLVGSIPCEIIMLKGLIGLNLSHNNLVGTIPTEIGEMEVLESLDLSFNQLSGPIPRSISKLSSLGVLVLSHNNISGEIPREGHLSTFNEASGFDGNPYLCGDPLPTKCAIENSLEPQLKDEDNSDEEEDKWEKWLLYMMIIVGFIVGFWGVVGSLILKKSWRYKYFKIVDEAYYKVHATIWESIQLLKGICIRK* 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12518142 12519407 + Chy9G166980.1 Chy09g00982 233879

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00982 421 SUPERFAMILY L domain-like 51 331 - -
Chy09g00982 421 Pfam Leucine Rich Repeat 147 169 IPR001611 GO:0005515
Chy09g00982 421 PRINTS Leucine-rich repeat signature 28 41 - -
Chy09g00982 421 PRINTS Leucine-rich repeat signature 145 158 - -
Chy09g00982 421 ProSiteProfiles Leucine-rich repeat profile. 27 48 IPR001611 GO:0005515
Chy09g00982 421 Gene3D Ribonuclease Inhibitor 1 342 IPR032675 -
Chy09g00982 421 SMART LRR_typ_2 145 169 IPR003591 -
Chy09g00982 421 SMART LRR_typ_2 240 264 IPR003591 -
Chy09g00982 421 SMART LRR_typ_2 288 311 IPR003591 -
Chy09g00982 421 SMART LRR_typ_2 25 48 IPR003591 -
Chy09g00982 421 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE FLS2-RELATED 4 403 - -
Chy09g00982 421 Pfam Leucine rich repeat 219 277 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00982 - - - csv:101212393 588.571
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00968 Chy-Chr9:12373577 Chy09g00982 Chy-Chr9:12518142 4.86E-95 dispersed
Chy09g00982 Chy-Chr9:12518142 Chy09g01008 Chy-Chr9:12682663 9.77E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g670 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00122 Chy09g00982 . . . . . . . . . . . . . . . . . . Bhi12g00033 . . . . . . . . . . . . . . . . Cme09g01509
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000277 0 6 1 0 0 5 0 8 6 10 5 6 1 10 13 10 5 0 1 5 7 4 4 5 7 8 5 6 5 0 143
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g00982 Chy_Chr09 FPKM 2.074695 2.385162 8.202295 9.615581 14.014331 12.682292 13.277253 1.552844 1.615639 1.877912