Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g00996 ATGGCCCCTACTTCCCTCGCTTTCCGCTGCCGACAATCCATCACCCCAACTGCAATCCGATCCTACGTAGCCGAGTTCATCTCCACTTTCTTCTACGTCTTCTCTGTCGTTGGAGCATCCATGGCCTCCCAGAAGTATATGCCAGGCATTACTACGGCAGACCTATCGAGTCTTCTGGTGGCCGCTATTGCCAATGCCTTTGCTTTGGCTTCAGCCGTATACATTGCCGCCAACATCTCCGGTGGACACGTCAACCCGGCAGTGACGTTCGGAATGGCCATTGGTGGCCATGTCAGCGTTCCCACTGCTCTCTTTTACTGGTTTGCTCAAATGCTTGCCTCTGTCATGGCCTGCATTATTCTTAGAGCCACCATTGTTGGACAGCGCGTTCCAAGCTATGCCATTGCCGATGAGATGACGGGGTTCGGAGCGTCGGTGGTGGAAGGTGTATTGACATTTGCGCTTGTATACACCGTCTTTGCCGCCAGCGATCCGAGACGAGGTCCGTGCAATGCTATTGGTGCGGTGATGATTGGGCTGATTGCTGGAGCCAATGTGCTGGCTGCGGGGCCATTTTCGGGTGGATCGGTGAACCCGGCGTGTGCATTTGGATCGGCGATTGTGGCGGGGAGTTTCAAGAACCAGGCAGTGTATTGGGTTGGGCCATTGATTGGGGCGGCTTTGGCTGGAATTGTTCATGATAATGTGGTTTTTCCTGCTGAAAATGTAGATTCATTCAGAGGGGTTCCTGAGGCTGTTATCGCTTGA 768 53.52 MAPTSLAFRCRQSITPTAIRSYVAEFISTFFYVFSVVGASMASQKYMPGITTADLSSLLVAAIANAFALASAVYIAANISGGHVNPAVTFGMAIGGHVSVPTALFYWFAQMLASVMACIILRATIVGQRVPSYAIADEMTGFGASVVEGVLTFALVYTVFAASDPRRGPCNAIGAVMIGLIAGANVLAAGPFSGGSVNPACAFGSAIVAGSFKNQAVYWVGPLIGAALAGIVHDNVVFPAENVDSFRGVPEAVIA* 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12599781 12600856 - Chy9G167120.1 Chy09g00996 233893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g00996 255 SUPERFAMILY Aquaporin-like 13 241 IPR023271 -
Chy09g00996 255 Pfam Major intrinsic protein 16 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g00996 255 Gene3D Glycerol uptake facilitator protein. 6 246 IPR023271 -
Chy09g00996 255 PANTHER AQUAPORIN-8 5 252 IPR034294 -
Chy09g00996 255 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g00996 255 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g00996 255 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g00996 255 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g00996 255 PRINTS Major intrinsic protein family signature 20 39 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g00996 255 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g00996 255 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Chy09g00996 255 PANTHER AQUAPORIN TIP5-1-RELATED 5 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00996 Chy-Chr9:12599781 Chy09g01079 Chy-Chr9:13139000 4.27E-64 dispersed
Chy09g00996 Chy-Chr9:12599781 Chy04g02024 Chy-Chr4:25910361 2.06E-59 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g00996 K09873 - csv:101214078 479.174