Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01009 ATGAGGAAACTTTCAGAAAAAAGTTCAGTTGTATTAGTTTGTGTGATATGCATGATGCTGCTTCTCCCATTTTGTTTCTCCATAACTGCAGCAGCTTGCATCCAAAAGGAGGGTGAAGCTCTTCTTCAACTCAAGAATAGTTTCTATAAAGATCCTTCTCATCGTTTGGCTTCGTGGAATAATGGAACTGATTGCTGTAATTGGAAAGGAGTGGGTTGCAATCAAATTACTGGACATGTTACTATCATTGATCTTCGGTGGGATTCTAATAAGGTCGACTTCTACTCATCACCTTTATATAGCAATAATTCCATTGATTCTAGTTTGCTTGAGTTGAAATACTTAAATTACTTGGATTTAAGTGGGAATGACTTCAACTATACTCCAATCCCAAACTCTTTAGGTTCAATGGTTGAATTAACATATCTTAATCTTTCTAGAACATTCTTTTCGAGAAAAGTTCCTTCTCATTTAGGAAATCTTACTAAATTTGATGCTCTTGATTTATCTTCAAATTATCAATTGCAAACCAATAATGGTGATGTTGAATGGATATCTCACCTTTCATCCTTGAAATTCCTTCAATTGAGTGACATGGACCTTTCCAAGGCTTCAAATTTGATGCAAACTTGTCTAAAAGTACTTGATTTATTGAGGAACTATAATGTTGGTGGAGATGTGTTTGGAAGCAATTATGAGAATGAATCTATGAGTTTCAGCAATAATAGATATGGTCTTGAAGTTCTTAACTTAGGAGATATATATTTAATGACCAGAATTCCAGATTGGTTGGGAAAGTTCAAAAACATGAAGTCCCTTAATCTTGAATATAGTCAGATTTATGGTCCAATTCCAGCTTCACTTGGAAATTTATCAAGTCTTGAATATTTAGATCTATCAAACAATGCTTTAACGGGAGCAATTCCAAACTCATTTGGAAGATTATTGAACCTGAGAAAATTGTATCTACAAGATAATAGATTGGTAAAGGCGGGCAGCGAATGTTTTATCCAACTTGAGAAATTGGAGGAATTAGACATATCAACAAACTTGCTCAAAGGCACTCTTACAGAACTTCATTTTGGCAATCTCTATCGGTTGCATACCTTAAGTATTGGCTACAATGAACTTCTCTATTTGGACGTGAAATCTAACTGGAATCCTCCCTTTCAATTACGAGTTTTTGATGCTTCATCATGTATTGATTGTTTTGGAGGTGACTTTCCTCAATGGCTTCGAACACAAAAGCACTTGATCGTTTACGATCTATCTAACAACTCTCTGGTGGGTTTCATTCCAAATCGGATAACAGAGCTTAAAAGCTTGATTGGATTGGATATGTCACACAACAATCTAATTGGGATAGTTCCGGCTGAAATTGGAGAAATGGAGTCATTAGAATCAATTGATCTATCTTTCAATCAACTCTCTGGACCAATTCCTCTAAGCTTATCAAAATTAAATTCATTAGGCATGTTGAAGTTGTCCCACAACAATTTCTCAAGCGAAATCCCTCGAGATGGTCATCTCTCCACATTCAATGAGGCTTCAAGTTTTGACGAAAATCCACATCTTTGTGGAGATCCACTTCCAATGAAATGTGTGAATGTGAATTCGTACGAGTCACCATCCAAAAATATTGACAACAATCTAGATCAAGACCAAGAAGAAAAATGGGAGAAGTGGTTACTTTACATAATGATAATACTTGGATATATAGTTGGATTTTGGGTAGTTGTTGGAAGTTTAATATTGAAGAAGAGTTGGAGATATTCATATTTCAAATTTGTGGATGAGGCTACTTACTAG 1809 35.21 MRKLSEKSSVVLVCVICMMLLLPFCFSITAAACIQKEGEALLQLKNSFYKDPSHRLASWNNGTDCCNWKGVGCNQITGHVTIIDLRWDSNKVDFYSSPLYSNNSIDSSLLELKYLNYLDLSGNDFNYTPIPNSLGSMVELTYLNLSRTFFSRKVPSHLGNLTKFDALDLSSNYQLQTNNGDVEWISHLSSLKFLQLSDMDLSKASNLMQTCLKVLDLLRNYNVGGDVFGSNYENESMSFSNNRYGLEVLNLGDIYLMTRIPDWLGKFKNMKSLNLEYSQIYGPIPASLGNLSSLEYLDLSNNALTGAIPNSFGRLLNLRKLYLQDNRLVKAGSECFIQLEKLEELDISTNLLKGTLTELHFGNLYRLHTLSIGYNELLYLDVKSNWNPPFQLRVFDASSCIDCFGGDFPQWLRTQKHLIVYDLSNNSLVGFIPNRITELKSLIGLDMSHNNLIGIVPAEIGEMESLESIDLSFNQLSGPIPLSLSKLNSLGMLKLSHNNFSSEIPRDGHLSTFNEASSFDENPHLCGDPLPMKCVNVNSYESPSKNIDNNLDQDQEEKWEKWLLYIMIILGYIVGFWVVVGSLILKKSWRYSYFKFVDEATY* 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12696216 12698959 - Chy9G167250.1 Chy09g01009 233906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01009 602 PANTHER LRR RECEPTOR-LIKE KINASE 245 311 - -
Chy09g01009 602 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Chy09g01009 602 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 299 424 - -
Chy09g01009 602 SMART LRR_typ_2 315 338 IPR003591 -
Chy09g01009 602 SMART LRR_typ_2 439 463 IPR003591 -
Chy09g01009 602 SMART LRR_typ_2 364 387 IPR003591 -
Chy09g01009 602 SMART LRR_typ_2 291 314 IPR003591 -
Chy09g01009 602 SMART LRR_typ_2 339 363 IPR003591 -
Chy09g01009 602 SMART LRR_typ_2 487 510 IPR003591 -
Chy09g01009 602 SUPERFAMILY L domain-like 243 531 - -
Chy09g01009 602 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Chy09g01009 602 PANTHER LRR RECEPTOR-LIKE KINASE 420 600 - -
Chy09g01009 602 PANTHER LRR RECEPTOR-LIKE KINASE 299 424 - -
Chy09g01009 602 PANTHER LRR RECEPTOR-LIKE KINASE 9 217 - -
Chy09g01009 602 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 420 600 - -
Chy09g01009 602 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 9 217 - -
Chy09g01009 602 Gene3D Ribonuclease Inhibitor 130 542 IPR032675 -
Chy09g01009 602 Gene3D Ribonuclease Inhibitor 30 129 IPR032675 -
Chy09g01009 602 SUPERFAMILY L domain-like 32 302 - -
Chy09g01009 602 Pfam Leucine Rich Repeat 465 487 IPR001611 GO:0005515
Chy09g01009 602 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 245 311 - -
Chy09g01009 602 PRINTS Leucine-rich repeat signature 294 307 - -
Chy09g01009 602 PRINTS Leucine-rich repeat signature 463 476 - -
Chy09g01009 602 Pfam Leucine rich repeat 269 328 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01009 - - - cmo:103483049 565.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01009 Chy-Chr9:12696216 Chy08g00399 Chy-Chr8:9573749 6.92E-51 dispersed
Chy09g01009 Chy-Chr9:12696216 Chy09g01011 Chy-Chr9:12704642 1.08E-11 proximal
Chy09g01008 Chy-Chr9:12682663 Chy09g01009 Chy-Chr9:12696216 3.91E-07 tandem
Chy09g01009 Chy-Chr9:12696216 Chy09g01010 Chy-Chr9:12703219 2.93E-12 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g672 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01009 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000277 0 6 1 0 0 5 0 8 6 10 5 6 1 10 13 10 5 0 1 5 7 4 4 5 7 8 5 6 5 0 143
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01009 Chy_Chr09 FPKM 30.823561 32.008339 21.264105 22.51568 21.906542 0.0 24.422161 27.785065 29.533113 26.819067