Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01010 ATGGGGCCACTTCCTACCAACATTGGTGATCAAATGCCGAAGTTAAAAACGTTGTTTCTGAATGATAATCTAATCAATGGTTCTTTACCACGTTCGATATGCAATTGGAAAAAATTGCAAATTTTGGATCTTTCAAACAATAGACTATCTGGAATGGTTCAAGGTTGTGTTTTAAATCCAAACTTGTATCATTTAGATTTGTCTTCCAACAACTTCTCAGGGATCTTTCCATATTTACATGAAAATATGATTGATATTCGAAAACTATACCTGAGAGACAATAATTTTGAAGGATCCATGCCAATTGTATTGAAGAATGCCAAAAATTTAGAAATTTTAGATCTTACCGGAAACAAATTCTCTGGAACCATCCCCACTTGGATAGGTAAGAATCTTAGAAGTTTGAAATTTCTAATACTTCAAAATAATTTGTTCAATGGTACCATTCCCTTAAGTTTGTACAACCTCATTAACTTGCAAATTCTGAATCTTGGCAACAATCAATTAGAAGGAAGCATCCCACCAAATATTAGCAACTTCCACCAAATGACCCTATTAAATTTCGAATACTCCTATGCACTGTTTTGTGGGTATATTGATCGTGGATCATGCTTTGCTGGTAAAAAAAATTTCGAACAATCTATCAAATCTAGTAATTTCAATTACTCCATGGAACAACTGTCGTCACTGGTGAATATAGATCTATCAAATAACTATTTGGTGGGTATCATTCCAAGTGAGATAACGAAGCTTACAAGGTTGATTGGATTGAATTTGTCCCACAACAATCTAACCGGGATAATTCCAGTTCAAATTGAAGAGATGGAGTCGTTAGAATCACTCGATCTATCTTTCAATCAACTTTCTGGACCAATTCCTCAAAGTTTATCAAGATTAAATTCATTAGGTGTCTTGATATTATCCCACAACAATTTTTCAGGCAACATTCCTCGAGATGGTCATCTCTTGACATTCAATGAGGCTTCAAGTTTTGACAACAATTCATACCTTTGTGGGGATCCACTTCCAATAAAATGTGTGATTGAAAATTCATCCAAACCATCATTTAGTGAAGATGAAGATCAGGAGGATAAATGCGAGAAGTGGTTGCTTTGCATTATGATAATACTCGGATTCATAGTTGGCTTTTGGGTCGTTGTTGGAAGTTTAATATTGAAGAAGAGTCGAAGATGA 1194 34.67 MGPLPTNIGDQMPKLKTLFLNDNLINGSLPRSICNWKKLQILDLSNNRLSGMVQGCVLNPNLYHLDLSSNNFSGIFPYLHENMIDIRKLYLRDNNFEGSMPIVLKNAKNLEILDLTGNKFSGTIPTWIGKNLRSLKFLILQNNLFNGTIPLSLYNLINLQILNLGNNQLEGSIPPNISNFHQMTLLNFEYSYALFCGYIDRGSCFAGKKNFEQSIKSSNFNYSMEQLSSLVNIDLSNNYLVGIIPSEITKLTRLIGLNLSHNNLTGIIPVQIEEMESLESLDLSFNQLSGPIPQSLSRLNSLGVLILSHNNFSGNIPRDGHLLTFNEASSFDNNSYLCGDPLPIKCVIENSSKPSFSEDEDQEDKCEKWLLCIMIILGFIVGFWVVVGSLILKKSRR* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12703219 12704412 - Chy9G167260.1 Chy09g01010 233907

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01010 397 PRINTS Leucine-rich repeat signature 275 288 - -
Chy09g01010 397 PRINTS Leucine-rich repeat signature 39 52 - -
Chy09g01010 397 PANTHER OS10G0469600 PROTEIN 10 204 - -
Chy09g01010 397 Pfam Leucine Rich Repeat 158 180 IPR001611 GO:0005515
Chy09g01010 397 Gene3D Ribonuclease Inhibitor 1 354 IPR032675 -
Chy09g01010 397 SUPERFAMILY L domain-like 28 341 - -
Chy09g01010 397 PANTHER OS10G0469600 PROTEIN 61 395 - -
Chy09g01010 397 Pfam Leucine rich repeat 60 120 IPR001611 GO:0005515
Chy09g01010 397 Pfam Leucine rich repeat 229 288 IPR001611 GO:0005515
Chy09g01010 397 PANTHER OS12G0559400 PROTEIN 61 395 - -
Chy09g01010 397 PANTHER OS12G0559400 PROTEIN 10 204 - -
Chy09g01010 397 SMART LRR_typ_2 156 180 IPR003591 -
Chy09g01010 397 SMART LRR_typ_2 37 59 IPR003591 -
Chy09g01010 397 SMART LRR_typ_2 275 299 IPR003591 -
Chy09g01010 397 SMART LRR_typ_2 251 274 IPR003591 -
Chy09g01010 397 SMART LRR_typ_2 12 36 IPR003591 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01010 - - - csv:101215046 482.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01007 Chy-Chr9:12681370 Chy09g01010 Chy-Chr9:12703219 1.71E-104 dispersed
Chy09g01008 Chy-Chr9:12682663 Chy09g01010 Chy-Chr9:12703219 3.91E-06 dispersed
Chy09g01010 Chy-Chr9:12703219 Chy06g01155 Chy-Chr6:10217771 4.27E-06 dispersed
Chy09g01009 Chy-Chr9:12696216 Chy09g01010 Chy-Chr9:12703219 2.93E-12 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g673 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00532 Chy09g01010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000277 0 6 1 0 0 5 0 8 6 10 5 6 1 10 13 10 5 0 1 5 7 4 4 5 7 8 5 6 5 0 143
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01010 Chy_Chr09 FPKM 5.019157 9.721288 4.173233 5.24312 5.829367 9.621276 6.146066 6.302222 6.268413 5.4851