Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01011 ATGAGGAAATTTGTTTCAAACGAAAGTTCAGTAATTGTATTATGGACGATGATACTTCTTCTACCGCTCCAATTTTGTTTCTCCATAACTGCTGCTTGTATCCAAAAGGAACGTGAAGCTCTTCTTCGATTCAAGAATAGTTTTTACGATGATCCTTCTCATCGCTTGGCTTCTTGGAATGGAGCTGATTGTTGCAATTGGAATGGAGTGGGTTGCAATCAAACTACTGGATATGTTACTACCATTGATCTTCGACATGATTATAATCAGGTTGACCCATACAAATCTTTATCTAGCAATTTCATTGACTCTAGTTTGTTAGAGTTGAAATACTTAAATCACTTGGATTTAAGTGGAAACTACTTCAATCATATTCAAATACCAAACTTTTTAGGTTCAATGGTTGAATTAACATATCTTAACCTTTCTTGGACATCAATTTCAGGCAAAATTTCTCCTCATTTAGGGAATCTTTCTAAATTGATAACTCTTGATTTAAAAGGAAATTATGAATTGGATGACTCAAGATGGGTGCAACTCAATGGGGATATTGAATGGATATCTCACCTTTCATATTTACAAATCCTTGACTTGACTGGAATGAACTTTTCAAATGCTATAAATTTGATGCAAGTGATAAGTTCTCTTCCTTCGTTGTCCTCCTTAAGTTTGAGTTCTTGTAGTCTTCAAAACAACCATTTTTCTTTGGGTTCCTCGTTGAATTATTCATCATTTCTTTCTAGAATTCATCTTCTAGAGTTATATGAAAATCAACTAAGTGACCCAATTCCTAAGGCTTTTCAGAATATGACTTCTTTGAAATACCTAGACCTTTCAGAAAATAACTTCACCACTATTTTTTATGGTGGAATTTCTACCTTCATTGAAAATAATTGTGGCCTAAAAGTACTTGATTTATCATGGAATCCTTATTTTGGTGGAGATGTATTTGGAAGTAGTTATGAGAATGAATCTATGGGTTGCGATCTTCAAGTGCTTAACTTAGGATTTACATCTTTGAGAACCAAAATTCCAGATTGGTTAGCAAAGTTAAAGAACTTGAAGACCATTGATTTTCAGTCTAGTCAGATTTATGGTCTAATTCCTACTTTACTTGGAAATTTATCAAATCTTGAATATTTAGATCTTTCAAACAATAATTTAACCGGAGCAGTTCCGACCTCATTTGGAAGATTACTGAATTTGGAGGTACTAGACATATCAGCGAACTCGCTTGAAGGTGTTTTAACAGAAGCTAGTTTTGCTAACCTCACTCAGTTAGTTACATACTTTAAACTTAGGCTACAATAA 1311 33.56 MRKFVSNESSVIVLWTMILLLPLQFCFSITAACIQKEREALLRFKNSFYDDPSHRLASWNGADCCNWNGVGCNQTTGYVTTIDLRHDYNQVDPYKSLSSNFIDSSLLELKYLNHLDLSGNYFNHIQIPNFLGSMVELTYLNLSWTSISGKISPHLGNLSKLITLDLKGNYELDDSRWVQLNGDIEWISHLSYLQILDLTGMNFSNAINLMQVISSLPSLSSLSLSSCSLQNNHFSLGSSLNYSSFLSRIHLLELYENQLSDPIPKAFQNMTSLKYLDLSENNFTTIFYGGISTFIENNCGLKVLDLSWNPYFGGDVFGSSYENESMGCDLQVLNLGFTSLRTKIPDWLAKLKNLKTIDFQSSQIYGLIPTLLGNLSNLEYLDLSNNNLTGAVPTSFGRLLNLEVLDISANSLEGVLTEASFANLTQLVTYFKLRLQ* 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12704642 12705952 - Chy9G167270.1 Chy09g01011 233908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01011 436 Pfam Leucine Rich Repeat 137 158 IPR001611 GO:0005515
Chy09g01011 436 Gene3D Ribonuclease Inhibitor 234 322 IPR032675 -
Chy09g01011 436 PANTHER LRR RECEPTOR-LIKE KINASE 29 428 - -
Chy09g01011 436 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Chy09g01011 436 Pfam Leucine rich repeat 353 412 IPR001611 GO:0005515
Chy09g01011 436 SUPERFAMILY L domain-like 32 414 - -
Chy09g01011 436 Gene3D Ribonuclease Inhibitor 323 431 IPR032675 -
Chy09g01011 436 PANTHER DISEASE RESISTANCE FAMILY PROTEIN / LRR FAMILY PROTEIN 29 428 - -
Chy09g01011 436 PRINTS Leucine-rich repeat signature 399 412 - -
Chy09g01011 436 PRINTS Leucine-rich repeat signature 378 391 - -
Chy09g01011 436 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Chy09g01011 436 SMART LRR_typ_2 399 423 IPR003591 -
Chy09g01011 436 SMART LRR_typ_2 109 133 IPR003591 -
Chy09g01011 436 SMART LRR_typ_2 375 398 IPR003591 -
Chy09g01011 436 SMART LRR_typ_2 270 289 IPR003591 -
Chy09g01011 436 Gene3D Ribonuclease Inhibitor 32 233 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01011 - - - csv:101219889 676.781
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01011 Chy-Chr9:12704642 Chy08g00399 Chy-Chr8:9573749 6.46E-06 dispersed
Chy09g01009 Chy-Chr9:12696216 Chy09g01011 Chy-Chr9:12704642 1.08E-11 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g675 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g01011 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g01533
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000277 0 6 1 0 0 5 0 8 6 10 5 6 1 10 13 10 5 0 1 5 7 4 4 5 7 8 5 6 5 0 143
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01011 Chy_Chr09 FPKM 3.442608 3.224572 2.187109 2.325375 3.266409 3.461103 3.465629 2.138724 1.699644 2.136781