Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01018 ATGGCTCAAAAGCTTCATTGTTCCATCATTCTTTTTTCTATGTTCATCCTCTCATCAAGTTCCCTACCTTTCTCAACCAAAACTAACAACAAAGCCATCGAGTTATGGTGCAGCCGAACCCCATATCCCGACGTATGCAAACACTTCTTCAATAACGGTAAATTCGACCCCAAAAATCTCTTAGATATCAAAAAAGCAGCTCTCAAAATCGCCATGGAAAGAGCTATGAAAACCGAAACCCTCACAAAAGCCTTAGGCCAAAAATGCCGCAACAAGAAAGAAAGAGCTGCATGGGCTGACTGTTTGGAGCTTTACCAAAGCACAATCCTCCACCTCAACAAAACCTTCTCCGACGAAAATTGCTCTAACTTTGATATCCAAACATGGCTCAGCTCCGCCTTGACCAACCTCCACACGTGTCGTGCTGGGTTCGTTGACCTCGGGATCAAAGATTACGGCGTAGTCTTCCCTTTTCTGGAGAACAATAATATCACAAAACTTATAAGTAATAGTTTGGCTATGAATAATTGTTCTGAGAGCGATGAGGGGAATACGAGTGATGAAGGATTTCCGAAGTGGGTTCGGGGTGGCGACCGACGGTTGTTGCAGGCAGCGGAGCCTAAGGCAGATTTGGTGGTGGCGCAGGACGGGTCGGGAAATTATAAGACTGTGCAAGCAGCAGTGGATGCGGCGGGGAAGAGGAAAGGGAGTGGGAGATTTGTGATACGTGTAAAGAAAGGAGTCTATAAAGAGAATGTAGTGATAAAAGTGAAGAATTTGATGCTTGTTGGAGATGGATTGAAATATACAATTATTACTGGGAGTAGAAGTGTTGGTGGTGGTTCTACTACTTTCAACTCTGCTACTGTTGCTGTGACCGGTGAACGTTTCATTGCTCGTGGGATCACATTCCGCAACACCGCCGGACCCCAAAACCACCAAGCGGTCGCCCTTCGTTCAGGTGCCGATCTCTCAGTCTTCTTCCGGTGCGGCTTTGAAGGATACCAAGACACTCTCTACGTCCATTCACAACGACAATTCTACAGAGAATGCTACATATACGGCACAGTCGATTTCATTTTCGGCAACTCAGCCGTAGTTCTACAAAACTGCATGATCTACGCAAGAAAACCAATGCAGGGGCAACAATGCGTTGTCACAGCCCAAGGCCGAACCGACCCAAACCAAAACACAGGGATCTCAATCCACAACTCGAGAGTGATGGCTGCAGACGACCTAAAACCGGTTATCAAGTCGGTTAGAACGTACTTGGGAAGGCCATGGAAGGAGTACTCGAGAACGGTTTACTTGCAAAGCTTCATGGATAGCTTGGTGAATCCAGCAGGGTGGTTGGAATGGAGTGGTAATTTTGCATTGAATACATTGTATTATGGAGAGTTCAAGAATTCTGGGCCTGGTTCTTCAACAGCTAATAGAGTGAAATGGAAGGGTTATAGAGTGATAACAAGTGCGAGTGAAGCAGCTAAATTCACTGTTGGGAATTTTATTGCTGGGAATTCATGGTTGCCAGGAACTGGAGTCCCATTCACTGCTGGGCTTTGA 1563 45.94 MAQKLHCSIILFSMFILSSSSLPFSTKTNNKAIELWCSRTPYPDVCKHFFNNGKFDPKNLLDIKKAALKIAMERAMKTETLTKALGQKCRNKKERAAWADCLELYQSTILHLNKTFSDENCSNFDIQTWLSSALTNLHTCRAGFVDLGIKDYGVVFPFLENNNITKLISNSLAMNNCSESDEGNTSDEGFPKWVRGGDRRLLQAAEPKADLVVAQDGSGNYKTVQAAVDAAGKRKGSGRFVIRVKKGVYKENVVIKVKNLMLVGDGLKYTIITGSRSVGGGSTTFNSATVAVTGERFIARGITFRNTAGPQNHQAVALRSGADLSVFFRCGFEGYQDTLYVHSQRQFYRECYIYGTVDFIFGNSAVVLQNCMIYARKPMQGQQCVVTAQGRTDPNQNTGISIHNSRVMAADDLKPVIKSVRTYLGRPWKEYSRTVYLQSFMDSLVNPAGWLEWSGNFALNTLYYGEFKNSGPGSSTANRVKWKGYRVITSASEAAKFTVGNFIAGNSWLPGTGVPFTAGL* 521
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12752095 12753901 + Chy9G167340.1 Chy09g01018 233915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01018 520 Pfam Plant invertase/pectin methylesterase inhibitor 32 174 IPR006501 GO:0004857
Chy09g01018 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 177 IPR035513 -
Chy09g01018 520 ProSitePatterns Pectinesterase signature 1. 236 255 IPR018040 -
Chy09g01018 520 CDD PMEI-like_3 35 176 - -
Chy09g01018 520 ProSitePatterns Pectinesterase signature 2. 353 362 IPR033131 -
Chy09g01018 520 SMART PMEI_2 28 174 IPR006501 GO:0004857
Chy09g01018 520 Pfam Pectinesterase 210 506 IPR000070 GO:0030599|GO:0042545
Chy09g01018 520 PANTHER PECTINESTERASE 7 519 - -
Chy09g01018 520 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 176 IPR006501 GO:0004857
Chy09g01018 520 SUPERFAMILY Pectin lyase-like 207 519 IPR011050 -
Chy09g01018 520 Gene3D - 204 520 IPR012334 -
Chy09g01018 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 31 177 IPR035513 -
Chy09g01018 520 PANTHER PECTINESTERASE 7 519 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy06g00857 Chy09g01018 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02125 Chy-Chr1:25934718 Chy09g01018 Chy-Chr9:12752095 3.91E-162 dispersed
Chy04g00723 Chy-Chr4:8881204 Chy09g01018 Chy-Chr9:12752095 4.72E-153 dispersed
Chy06g00258 Chy-Chr6:1740315 Chy09g01018 Chy-Chr9:12752095 0 dispersed
Chy06g00857 Chy-Chr6:6182906 Chy09g01018 Chy-Chr9:12752095 0 dispersed
Chy06g01769 Chy-Chr6:20856795 Chy09g01018 Chy-Chr9:12752095 0 dispersed
Chy09g01018 Chy-Chr9:12752095 Chy09g01437 Chy-Chr9:15944062 1.41E-155 dispersed
Chy09g01018 Chy-Chr9:12752095 Chy09g00837 Chy-Chr9:11150722 2.45E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01018 K01051 - csv:101216005 1013.06