Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01031 ATGGAGGTGACGGCAGATCCAGCCAAGAGAAATCATATGTTGCTGCCTTCCCCTTCTCCAGTTGTAGCCGTTGCTATCAGTGGGAAGAAAAACAGTAAATATATAATTAGGTGGGCATTGGAAAAGTTTCTACCTGAGGGCACCATTGATTTCAAGTTGCTGCACTTCATCCCAAGGATTACCAGTGTCCCAACTCCAATGGGAAATGCAATTCCAATTTCACAAGTTCGTGAGGACGTCGCTGCGGCTTATAGGAAAGAAATCTGGTGGCAGACAAGTGAAAAACTTCTTCCATTTAAGAAGATGTTTGCTCAGCGAAAGGTTCATCTTGATGTTGTAACTCTTGAAGCAGATGATATAGCAGGTGCAATAATAGAAGAGGTTACAAAGTGTTCAATCAACAAGCTTGTTATAGGGGTTTCATCACAGGGATTATTCTCAAGGAAGCTAAGCGGTCTATCCTCAAGAATATCAGCCCTTGCACCTAGATATTGTACGTTGTATGCTATTTCAAAAGGAAAACTAGCCTCAATACGACCGCCTGATATGGATATGAACGTGAGCATTAGAGATGATGCAAGTGAAGAAAGTTCTGCAAGTAGCTACTCGAGCTATACATCTAGCTCCCTTACAGATGGCAGTTCAAGCTTAACTAGCTCCTACTCTCATTTCCCTTCTCCTTCCCCTTCCCTACCATTACAACGATTTCAAGCTCTTTCAACCATTAATCAACCTCTTCTTACGAAAAAACCTAGCCCCATTAAAGCCGACCATTCTAGATGTCAATCCGTTGACATTGAGAATCAGGTGGATGGCGTTCCTTCTTCTTCCTATGTTTCAGACGGCATACAAACATTGAGTCGAGTCTCTAGTAGTAAAAGCTCGCCAACAGAGAACAAGTCTTGGAATTCTGATGAAGCTTCATCTTCCGGCGCGTTTAATGATTATTCCTCATGTGAAAGTCAGGTGGATGTCAGCTTTGAGCTTGAAAAGTTGAAAATCGAACTAAGACATGCGAGAGGAATGTTTGCAATTGCCCAACGAGAGACAATTGATGCCTCTCGAGAGCTGAACCATCTAAATAAGCAACGGTCGGAGGAAGCTAGGAAACTCGAAGAGATCAACAACAAAGCGGTGGCCGCCAAAGAATTTGCAAGGGAAGAGAGAGTGAAACATGAAGCTTTGAGAAGAGAAGCAAAGTATGTAAAAGAACGCGCTGAAAGAGAGGGCATCTACAGGAAGGAAGCAGAGATAAAAGCTCTTCAAAATGCCAAAGAGAAGGGAAAGCATGAGAATGCTCTTCAAGGACCTCTGCAGCAATATCAACATTTTCAGTGGGAAGATATTGTTTCTGCCACATCATCTTTCTCTGAGGATCTTAAGATTGGAATGGGAGCACATGGAACAGTTTATAAGTGCAGTTTGCATCATACAACCGTAGCAGTGAAGGCTCTTCATTCTAGAGATAGTCACAAACAGATGCAATTGCTTCAGGAGCTAGAAGTCTTGAGCAGAATCCATCATCCCCATCTACTACTACTCCTCGGTGCTTGTCCGGATAAGAATTGTCTGGTTTATGAGTACATGGAAAATGGTAGCTTGGAGGATAGGTTATACCGCAGAGGCAATACACCTGCAATCCCATGGTATGAGAGGTTTCGAATTGCTTGGGAAATAGCCTCTGCTCTTGTCTTTCTTCACAGCTCAAAACCAAAATCAATAATCCACCGTGATCTTAAACCCGCAAACATCTTACTTGACCAAAACCTTGTGAGTAAAATCGGCGACGTCGGTCTTTCTACAGTGTTTAATTCAGATCCTTCAATGTCTACTGCATTCATGAATAGCGGACCAGTTGGGACTCTCTGTTACATAGATCCTGAGTATCAACGAACTGGATTAATCTCACCTAAGTCTGATGTCTATGCTTTTGGAATGGTGATCCTGCAGTTACTAACTGCAAAACCAGCAGTAGCACTAACCCATGTGGTGGAAACAGCCATTGATAACAGCACTTTAATTAAGGTTCTGGATATAGAGGCTGGGTATTGGCCCCTCGAAGAGACGTATGAATTGGCAAGATTAGGACTTCACTGTGCCGAGATGCAACGTAAAGATAGGCCTGACTTGAAGAACCAAGTACTTCCCTTGTTGATGACACTGAAAAAAGTTGCTGATGAGGCTCGAAATTTGGCCTCCAAAGTTCCAGCTGCAATTCCTAACCATTTCATCTGTCCAATACTTCAGGATGTGATGAATGACCCTTGTGTTGCGGCGGATGGATACACATACGATCGTCAGGCAATAGAGAAATGGCTTCAGAAGAACGATAACTCACCGATGACAAAGTTGCCGTTGCCAGATAAGAATTTAATACCAAACTATAGTCTTCTCTCTGCAATTGTTGAGTGGAACTCCAAAAGAAGTTAA 2430 42.8 MEVTADPAKRNHMLLPSPSPVVAVAISGKKNSKYIIRWALEKFLPEGTIDFKLLHFIPRITSVPTPMGNAIPISQVREDVAAAYRKEIWWQTSEKLLPFKKMFAQRKVHLDVVTLEADDIAGAIIEEVTKCSINKLVIGVSSQGLFSRKLSGLSSRISALAPRYCTLYAISKGKLASIRPPDMDMNVSIRDDASEESSASSYSSYTSSSLTDGSSSLTSSYSHFPSPSPSLPLQRFQALSTINQPLLTKKPSPIKADHSRCQSVDIENQVDGVPSSSYVSDGIQTLSRVSSSKSSPTENKSWNSDEASSSGAFNDYSSCESQVDVSFELEKLKIELRHARGMFAIAQRETIDASRELNHLNKQRSEEARKLEEINNKAVAAKEFAREERVKHEALRREAKYVKERAEREGIYRKEAEIKALQNAKEKGKHENALQGPLQQYQHFQWEDIVSATSSFSEDLKIGMGAHGTVYKCSLHHTTVAVKALHSRDSHKQMQLLQELEVLSRIHHPHLLLLLGACPDKNCLVYEYMENGSLEDRLYRRGNTPAIPWYERFRIAWEIASALVFLHSSKPKSIIHRDLKPANILLDQNLVSKIGDVGLSTVFNSDPSMSTAFMNSGPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAVALTHVVETAIDNSTLIKVLDIEAGYWPLEETYELARLGLHCAEMQRKDRPDLKNQVLPLLMTLKKVADEARNLASKVPAAIPNHFICPILQDVMNDPCVAADGYTYDRQAIEKWLQKNDNSPMTKLPLPDKNLIPNYSLLSAIVEWNSKRS* 810
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12833155 12838842 - Chy9G167470.1 Chy09g01031 233928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01031 809 SMART serkin_6 456 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy09g01031 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 574 586 IPR008271 GO:0004672|GO:0006468
Chy09g01031 809 Gene3D Transferase(Phosphotransferase) domain 1 529 737 - -
Chy09g01031 809 CDD RING-Ubox_WDSUB1_like 743 783 - -
Chy09g01031 809 SMART Ubox_2 742 804 IPR003613 GO:0004842|GO:0016567
Chy09g01031 809 Gene3D Phosphorylase Kinase; domain 1 418 528 - -
Chy09g01031 809 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 22 152 - -
Chy09g01031 809 Coils Coil 329 349 - -
Chy09g01031 809 ProSiteProfiles Protein kinase domain profile. 456 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy09g01031 809 Gene3D HUPs 21 162 IPR014729 -
Chy09g01031 809 SUPERFAMILY RING/U-box 733 808 - -
Chy09g01031 809 Coils Coil 357 388 - -
Chy09g01031 809 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 35 19 805 - -
Chy09g01031 809 ProSiteProfiles U-box domain profile. 738 809 IPR003613 GO:0004842|GO:0016567
Chy09g01031 809 CDD STK_N 21 173 - -
Chy09g01031 809 SUPERFAMILY Protein kinase-like (PK-like) 434 714 IPR011009 -
Chy09g01031 809 Pfam U-box domain 739 808 IPR003613 GO:0004842|GO:0016567
Chy09g01031 809 MobiDBLite consensus disorder prediction 287 313 - -
Chy09g01031 809 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 738 809 IPR013083 -
Chy09g01031 809 PANTHER OS02G0152300 PROTEIN 19 805 - -
Chy09g01031 809 Pfam Protein kinase domain 458 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Chy09g01031 809 ProSitePatterns Protein kinases ATP-binding region signature. 462 483 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01031 - - - csv:101217665 1470.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g01451 Chy-Chr5:18361498 Chy09g01031 Chy-Chr9:12833155 1.19E-17 dispersed
Chy09g01031 Chy-Chr9:12833155 Chy01g02190 Chy-Chr1:26459732 3.61E-121 dispersed
Chy09g01031 Chy-Chr9:12833155 Chy06g00167 Chy-Chr6:1087735 5.57E-120 transposed
Chy09g01031 Chy-Chr9:12833155 Chy04g00284 Chy-Chr4:2522498 1.48E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g716 . . . . . . . . . Cmo18g01279 . . . . . . Cpe14g00102 Bhi01g01293 . . . . . . Cla01g00450 . . . . . . . . . . Lsi05g01216 . Chy09g01031 Cme06g01014 . . . . . . . . . . . . Cma18g01253 Car16g00105 Car18g01163 Cpe09g00082 Cpe13g00095 . . . . . . . . . . . . . . . Csa03g01725 . Cme09g01573
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007149 1 0 1 0 1 1 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 1 1 0 0 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71479 PF00069 Pkinase 3.50E-40 CL0016 Chy PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01031 Chy_Chr09 FPKM 3.01529 3.170244 2.854041 2.826664 2.830526 3.288921 3.357899 2.872769 2.693838 3.283323