Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01053 ATGTACCACACCACTAAATCAGAGTCCGATTTTGGTTTCCTTGACCCAATTCGCCGCCACTTATTAGGTGAATCGGATATTTCCGCCGCCGCCGCCGCTCCCGTCGGCAGACCCACTACCGTTTTCAGTCGGAGTGGTAGTTTTAGTAGCTTAATTCCATGTCTTGAAGACAATTGGGGTGATTTGCCTCTCAAGGTTGACGACTCCGAAGATATGATGCTCGCCGCCGTTCTACGGGATGCCGTCGGTGTCGGATGGGTTCCATCGCTAGGAAGTTGTGATTTTGGGTTTTCTGAGGTGAAATCAGAGCCGGAGGTGATTCCAGTGAGTTTCCCCGCGGTGTTACCGAATGTGACGATGAAGCCGACCGTGGTACCAGAGAAAGGGAAGCATTATAGAGGAGTGCGACAACGGCCATGGGGGAAATTCGCGGCGGAGATTCGAGACCCAGCGAAAAATGGAGCAAGAGTTTGGCTTGGAACGTACGAGACGGCAGAGGATGCGGCGTTGGCTTATGATCGAGCGGCTTATCGAATGCGAGGATCAAGGGCTTTGCTTAATTTCCCCCTCCGTGTCAACTCCGGCGAGCCGGAACCAGTTCGGGTGACATCAAAGCGATCGTCGCCGGAGGTATCTTCGTCGCCGAAGCGAAGAAAGAAAGTTGGGTCCGCCGTGGAGAGTGTAGGAGTACAAGTGGAGCAACAAGTGGCAAGCTTTACACATGGAGGACAGCTGTTTGTTAGCCAATGCTAA 753 52.99 MYHTTKSESDFGFLDPIRRHLLGESDISAAAAAPVGRPTTVFSRSGSFSSLIPCLEDNWGDLPLKVDDSEDMMLAAVLRDAVGVGWVPSLGSCDFGFSEVKSEPEVIPVSFPAVLPNVTMKPTVVPEKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVTSKRSSPEVSSSPKRRKKVGSAVESVGVQVEQQVASFTHGGQLFVSQC* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 12974431 12975183 - Chy9G167690.1 Chy09g01053 233950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01053 250 PANTHER DNA-BINDING DOMAIN 26 231 IPR044808 GO:0003700|GO:0009873
Chy09g01053 250 SMART rav1_2 131 195 IPR001471 GO:0003700|GO:0006355
Chy09g01053 250 Gene3D AP2/ERF domain 130 192 IPR036955 GO:0003700|GO:0006355
Chy09g01053 250 CDD AP2 130 189 IPR001471 GO:0003700|GO:0006355
Chy09g01053 250 PRINTS Ethylene responsive element binding protein signature 155 171 IPR001471 GO:0003700|GO:0006355
Chy09g01053 250 PRINTS Ethylene responsive element binding protein signature 132 143 IPR001471 GO:0003700|GO:0006355
Chy09g01053 250 Pfam AP2 domain 131 181 IPR001471 GO:0003700|GO:0006355
Chy09g01053 250 PANTHER BNAANNG21280D PROTEIN 26 231 - -
Chy09g01053 250 ProSiteProfiles AP2/ERF domain profile. 131 189 IPR001471 GO:0003700|GO:0006355
Chy09g01053 250 SUPERFAMILY DNA-binding domain 131 191 IPR016177 GO:0003677
Chy09g01053 250 MobiDBLite consensus disorder prediction 196 224 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00330 Chy-Chr5:3350035 Chy09g01053 Chy-Chr9:12974431 3.61E-29 dispersed
Chy06g02077 Chy-Chr6:24966336 Chy09g01053 Chy-Chr9:12974431 3.05E-104 dispersed
Chy06g02078 Chy-Chr6:24971488 Chy09g01053 Chy-Chr9:12974431 1.55E-104 dispersed
Chy09g01024 Chy-Chr9:12785574 Chy09g01053 Chy-Chr9:12974431 2.62E-32 dispersed
Chy09g01025 Chy-Chr9:12799751 Chy09g01053 Chy-Chr9:12974431 1.35E-32 dispersed
Chy06g02076 Chy-Chr6:24938278 Chy09g01053 Chy-Chr9:12974431 5.54E-32 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18502 PF00847 AP2 9.30E-15 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01053 K09286 - csv:101221583 453.366