Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01079 ATGGTGAAGTTGGCTGTGGGTTCCGCCGGCGATTCATTCAGTGCGGCTTCTCTTAAAGCCTATCTCTCTGAATTCATCGCCACTCTCCTTTTCGTTTTCGCCGGTGTTGGCTCCGCCATTGCCTACGGTAAATTGACGTCCGATGCAGCATTGGATCCACCAGGTTTGGTGGCGGTGGCAGTGGCTCACGCATTTGCGTTGTTCGTGGGTGTGTCGATGGCGGCCAACATCTCCGGCGGGCACCTGAACCCAGCAGTGACCTTTGGGTTGGCCATCGGTGGCAACATCACCATCTTGACTGGCTTGTTCTATTGGATAGCCCAGTTGCTTGGCTCCATTGTTGCTTGCCTCCTCCTTCAATTTGTTACCAACGGCAAGAGCATTCCAACCCACGGCCTGGCAGCAGGACTTGGAGCAGTTGAAGGGGTCGTATTCGAAATAATAATCACCTTCGGTCTGGTCTACACAGTTTACGCCACCGCCGCGGACCCCAAAAAGGGTTCTCTTGGAACCATTGCCCCAATCGCCATCGGCTTCATTGTGGGTGCCAACATTCTCGCTGCTGGCCCATTTAGCGGAGGGTCCATGAACCCGGCCCGTTCCTTCGGCCCAGCTGTTGTAAGTGGAGACTTCTCTCAGATTTGGATCTACTGGGTCGGCCCACTTATTGGCGGTGGCCTTGCTGGGCTTATCTATGGCGATGTGTTTATTTCCTCTTATGCCCCTGTTCCTGTCTCTGGTGATTATGCTTAA 753 54.05 MVKLAVGSAGDSFSAASLKAYLSEFIATLLFVFAGVGSAIAYGKLTSDAALDPPGLVAVAVAHAFALFVGVSMAANISGGHLNPAVTFGLAIGGNITILTGLFYWIAQLLGSIVACLLLQFVTNGKSIPTHGLAAGLGAVEGVVFEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFSQIWIYWVGPLIGGGLAGLIYGDVFISSYAPVPVSGDYA* 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13139000 13141014 - Chy9G167950.1 Chy09g01079 233976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01079 250 TIGRFAM MIP: MIP family channel proteins 23 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g01079 250 Gene3D Glycerol uptake facilitator protein. 2 243 IPR023271 -
Chy09g01079 250 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g01079 250 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g01079 250 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g01079 250 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g01079 250 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g01079 250 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g01079 250 PANTHER AQUAPORIN TIP2-2-RELATED 1 250 - -
Chy09g01079 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Chy09g01079 250 Pfam Major intrinsic protein 14 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g01079 250 SUPERFAMILY Aquaporin-like 17 239 IPR023271 -
Chy09g01079 250 CDD MIP 19 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy09g01079 250 ProSitePatterns MIP family signature. 81 89 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02089 Chy-Chr1:25623948 Chy09g01079 Chy-Chr9:13139000 4.63E-116 dispersed
Chy03g01245 Chy-Chr3:15524638 Chy09g01079 Chy-Chr9:13139000 3.07E-78 dispersed
Chy09g00996 Chy-Chr9:12599781 Chy09g01079 Chy-Chr9:13139000 4.27E-64 dispersed
Chy09g01079 Chy-Chr9:13139000 Chy12g01348 Chy-Chr12:17763468 1.43E-78 dispersed
Chy09g01079 Chy-Chr9:13139000 Chy04g02024 Chy-Chr4:25910361 9.28E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01079 K09873 - csv:101203925 462.611