Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01087 ATGGCATTCTTATTCGTTCACTCATTTTTCTTCCCCACTTTCTTCCTCCTCTGCTTTTCCGCCGCCGCCAATCACCACTGGATCGGCCCCACCGGCCACCGCCTCATAAAAGTGAACCTTAAGGGTGGCTCCGACGTGTTTCTCTCCGTGCAAGCCGCCGTGGACTCAGTTCCCGATTACAATACCGTTAACACTATCATCCGAATCAGCCCTGGATATTACGTGGAGAAGGTAGTGGTGCCGGCGACGAAGCCGTACATAACATTTGAAGGAGGAGGAAAAGAGACGACGGTGATTGAGTGGCATGACAGGGCCGGTGACCGTGGTCCGAGCGGACAGCAGCTTCGTACTTACAGAACTGCCTCCGTTACCGTTTTTGCTAATTACTTCTCTGCCCGAAACATCAGCTTCAAGAATACGGCACCGGCGCCATTGCCCGGAATGCAAGGGTGGCAGGCGGCGGCATTTCGGATATCCGGCGACAAAGCCTATTTTTCGGGTTGCGGATTCTACGGGGCACAAGATACCCTTTGCGACGACGCCGGCCGTCATTACTTCAAAGAATGTTACATTGAAGGCTCCATAGACTTCATCTTTGGGAATGGCCGTTCCATGTATAAGGATTGCGAACTGCACTCCATCGCCACCCGGTTCGGTTCCATAGCAGCGCAAGATAGAAACTCGCCAAACGAAAAGACCGGGTTCGCTTTCCTTGGATGTAAGGTAACCGGTTCAGGACCCGTCTACGTGGGTCGTGCCATGGGCCAGTACTCCAGAATTGTCTACGCGTATACTTACTTTGATGATGTGGTAGCACACGGTGGATGGGATGACTGGGACCATCTCAGTAACAAAAACAAACCTTCTCTCTGGATTGATTATTTTTGTGGGTGTGTGTGTGTGTGGTGCAGGACTGTATTTTTTGGAGTATACAAGTGCTGGGGGCCAGGGGCGAGTAAAGTAAAAGGAGTATCATGGGCCAAGGAGTTGGAGTATAAAGAGGCACATCCATTTCTAGCCAAGAGCTTTGTCAATGGCAGACACTGGATTGCACCATCTGATGCTTAG 1068 51.22 MAFLFVHSFFFPTFFLLCFSAAANHHWIGPTGHRLIKVNLKGGSDVFLSVQAAVDSVPDYNTVNTIIRISPGYYVEKVVVPATKPYITFEGGGKETTVIEWHDRAGDRGPSGQQLRTYRTASVTVFANYFSARNISFKNTAPAPLPGMQGWQAAAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPNEKTGFAFLGCKVTGSGPVYVGRAMGQYSRIVYAYTYFDDVVAHGGWDDWDHLSNKNKPSLWIDYFCGCVCVWCRTVFFGVYKCWGPGASKVKGVSWAKELEYKEAHPFLAKSFVNGRHWIAPSDA* 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13184232 13188611 - Chy9G168030.1 Chy09g01087 233984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01087 355 Pfam Pectinesterase 41 346 IPR000070 GO:0030599|GO:0042545
Chy09g01087 355 PANTHER PECTINESTERASE 68-RELATED 23 354 - -
Chy09g01087 355 ProSitePatterns Pectinesterase signature 2. 191 200 IPR033131 -
Chy09g01087 355 SUPERFAMILY Pectin lyase-like 35 352 IPR011050 -
Chy09g01087 355 Gene3D - 35 354 IPR012334 -
Chy09g01087 355 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 23 354 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01447 Chy-Chr3:17086181 Chy09g01087 Chy-Chr9:13184232 1.77E-77 dispersed
Chy07g01088 Chy-Chr7:15822713 Chy09g01087 Chy-Chr9:13184232 2.48E-81 dispersed
Chy07g01267 Chy-Chr7:17393411 Chy09g01087 Chy-Chr9:13184232 1.30E-84 dispersed
Chy09g00226 Chy-Chr9:1869383 Chy09g01087 Chy-Chr9:13184232 1.27E-68 dispersed
Chy09g01087 Chy-Chr9:13184232 Chy11g00374 Chy-Chr11:3460066 2.12E-80 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01087 - - csv:101204661 672.93