Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01096 ATGAGGGACACCCTTAAACTCGGTGTCTGCGCCAAACTGCTTGGTGGCCTTCTCGACATTACGATTGGCAAGCCCCCAGTGACCCCTTGCTGTAGTTTGATCGAAGGTCTTGCTGATCTTGAAGCTGCTGTTTGCCTTTGCACTGCCATTAAGGCTGACATTTTGGGTATCAACCTTAATGTTCCTCTCTCCCTTAGCTTGCTCCTTAATGTTTGCCAAAAGAATGTTCCTAAGGGATTCCAGTGTTGA 249 47.79 MRDTLKLGVCAKLLGGLLDITIGKPPVTPCCSLIEGLADLEAAVCLCTAIKADILGINLNVPLSLSLLLNVCQKNVPKGFQC* 83
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13248618 13249561 - Chy9G168120.1 Chy09g01096 233993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01096 82 Gene3D - 1 82 IPR036312 -
Chy09g01096 82 SMART aai_6 10 82 IPR016140 -
Chy09g01096 82 Pfam Hydrophobic seed protein 2 82 IPR027923 -
Chy09g01096 82 CDD HPS_like 2 82 IPR027923 -
Chy09g01096 82 PANTHER - 2 82 - -
Chy09g01096 82 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 2 82 IPR036312 -
Chy09g01096 82 PANTHER HYPRP2 2 82 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01096 - - - csv:101206483 152.14
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy06g02037 Chy09g01096 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01096 Chy-Chr9:13248618 Chy09g01101 Chy-Chr9:13269590 1.92E-41 dispersed
Chy09g01106 Chy-Chr9:13293686 Chy09g01096 Chy-Chr9:13248618 3.27E-23 dispersed
Chy11g01698 Chy-Chr11:23410095 Chy09g01096 Chy-Chr9:13248618 1.36E-24 dispersed
Chy09g01096 Chy-Chr9:13248618 Chy09g01099 Chy-Chr9:13259401 3.20E-29 proximal
Chy03g01110 Chy-Chr3:14448559 Chy09g01096 Chy-Chr9:13248618 1.54E-27 transposed
Chy07g00490 Chy-Chr7:3917858 Chy09g01096 Chy-Chr9:13248618 1.84E-21 transposed
Chy06g02035 Chy-Chr6:24505869 Chy09g01096 Chy-Chr9:13248618 6.45E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g518 Blo02g01047 . . . . . Bma07g01600 . Cmo06g00795 . . Cma15g01133 . . Sed03g1246 . . Bhi11g00206 Tan01g2018 Cmetu06g2397 . . Mch10g1550 . Cla10g00267 Cam10g0275 Cec10g0283 Cco10g0279 Clacu10g0277 Cmu10g1117 Cre10g0526 . . . . Lsi07g01312 Csa05g00414 Chy09g01096 Cme06g02585 . Blo19g00256 . . Bpe08g01433 . . Bma12g00161 . . Cmo15g01192 Cma06g00775 . . . . . Bhi12g00431 . . Lac11g2276 . . Lcy12g1820 Cla01g00386 Cam01g0403 Cec01g0395 Cco01g0416 Clacu01g0404 Cmu01g0385 Cre09g2123 Lsi09g00416 Csa03g00286 Chy06g02037 Cme09g01625
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000088 2 11 1 5 4 10 1 11 11 11 13 11 17 13 14 20 10 12 1 11 14 4 3 8 10 9 6 10 10 3 266
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01096 Chy_Chr09 FPKM 6.114198 5.089636 3.987141 4.129697 6.242719 6.215805 4.6535 7.321752 5.58383 5.496304