Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01111 ATGTCAGCTTGCAGAGACGAAGATCCTCGCATCCATGGCATCAGGACCAAGATTCGTGTTGTCCCTAATTTCCCTCAACCAGGTATCATGTTCCAAGACATAACCACTCTGTTACTCGACCCCAAAGCATTCAAAGATACTATTGATTTGTTCGTCGAGCGATACAAAGGGAAAAACATTTCGGTTGTTGCAGGAATTGAAGCTCGAGGTTTTATATTTGGCCCTCCAATTGCATTGGCTATAGGAGCAAAATTTATCCCTTTAAGGAAACCAAGGAAGCTACCTGGAGAAGTTATTTCTGAAAAGTACATATTAGAATATGGAAGTGATTGCCTTGAGATGCATGTTGGAGCTGTCAAACCACATGAACGGGCCTTGGTGGTGGATGACTTGATTGCGACTGGTGGCACTCTCCGTGCAGCTATGAATTTACTTGAACGCGCAGGAGCTGAAGTAATTGAATGTGCTTGCGTCATTGAATTGCCAGTTTTGAAGGGTCGGGAACAATTGAACGATAAGCCATTGTTTGTGCTAGTAGAGTACCAATAA 549 43.35 MSACRDEDPRIHGIRTKIRVVPNFPQPGIMFQDITTLLLDPKAFKDTIDLFVERYKGKNISVVAGIEARGFIFGPPIALAIGAKFIPLRKPRKLPGEVISEKYILEYGSDCLEMHVGAVKPHERALVVDDLIATGGTLRAAMNLLERAGAEVIECACVIELPVLKGREQLNDKPLFVLVEYQ* 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13361316 13366256 - Chy9G168270.1 Chy09g01111 234008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01111 182 CDD PRTases_typeI 48 180 IPR000836 -
Chy09g01111 182 SUPERFAMILY PRTase-like 12 175 IPR029057 -
Chy09g01111 182 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 3-RELATED 2 181 - -
Chy09g01111 182 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 2 181 - -
Chy09g01111 182 Pfam Phosphoribosyl transferase domain 50 173 IPR000836 -
Chy09g01111 182 TIGRFAM apt: adenine phosphoribosyltransferase 15 181 IPR005764 GO:0003999|GO:0005737|GO:0006168
Chy09g01111 182 Gene3D - 2 182 IPR029057 -
Chy09g01111 182 Hamap Adenine phosphoribosyltransferase [apt]. 14 181 IPR005764 GO:0003999|GO:0005737|GO:0006168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01111 K00759 APRT, apt; adenine phosphoribosyltransferase [EC:2.4.2.7] - csv:101216186 359.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01586 Chy-Chr3:17886508 Chy09g01111 Chy-Chr9:13361316 1.22E-96 transposed
Chy06g02026 Chy-Chr6:24202609 Chy09g01111 Chy-Chr9:13361316 8.85E-101 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy09g01111 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Chy03g01111 . 33 189 PRT Gene Family AT1G80050 72.2 9.0e-58 219.9
Chy06g02026 . 32 167 PRT Gene Family AT1G80050 77.2 4.5e-57 217.6
Chy03g01586 . 119 268 PRT Gene Family AT1G80050 70.7 6.5e-56 213.8
Chy03g01111 . 1 148 PRT Gene Family AT5G11160 80.4 8.8e-64 240.0
Chy09g01111 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Chy03g01586 . 95 234 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Chy06g02026 . 10 147 PRT Gene Family AT5G11160 72.5 2.4e-53 205.3
Chy03g01586 . 90 270 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Chy09g01111 . 7 180 PRT Gene Family AT1G27450 73.6 1.3e-71 266.2
Chy06g02026 . 6 167 PRT Gene Family AT1G27450 77.8 9.9e-69 256.5
Chy03g01111 . 11 168 PRT Gene Family AT1G27450 72.2 1.8e-62 235.7
Chy11g00327 . 74 558 PRT Gene Family AT2G16570 85.0 1.0e-241 832.8
Chy11g00327 . 73 558 PRT Gene Family AT4G34740 85.4 1.6e-242 835.5
Chy11g00327 . 48 531 PRT Gene Family AT4G38880 72.1 5.0e-198 687.6
Chy03g01586 . 90 270 PRT Gene Family AT1G27450 82.3 1.1e-80 296.2
Chy09g01111 . 7 180 PRT Gene Family AT1G27450 73.6 1.3e-71 266.2
Chy06g02026 . 6 167 PRT Gene Family AT1G27450 77.8 9.9e-69 256.5
Chy03g01111 . 11 168 PRT Gene Family AT1G27450 72.2 1.8e-62 235.7
Chy09g01111 . 30 180 PRT Gene Family AT1G80050 75.5 4.6e-62 234.2
Chy03g01111 . 33 189 PRT Gene Family AT1G80050 72.2 9.0e-58 219.9
Chy06g02026 . 32 167 PRT Gene Family AT1G80050 77.2 4.5e-57 217.6
Chy03g01586 . 119 268 PRT Gene Family AT1G80050 70.7 6.5e-56 213.8
Chy06g02026 . 6 99 PRT Gene Family AT4G22570 87.2 3.7e-44 174.1
Chy09g01111 . 6 104 PRT Gene Family AT4G22570 81.8 6.4e-44 173.3
Chy03g01586 . 94 186 PRT Gene Family AT4G22570 80.6 1.6e-39 158.7
Chy06g02026 . 7 98 PRT Gene Family AT4G12440 87.0 4.6e-41 163.7
Chy09g01111 . 1 96 PRT Gene Family AT4G12440 83.3 1.3e-40 162.2
Chy03g01586 . 90 185 PRT Gene Family AT4G12440 79.2 6.2e-38 153.3
Chy03g01111 . 1 148 PRT Gene Family AT5G11160 80.4 8.8e-64 240.0
Chy09g01111 . 8 145 PRT Gene Family AT5G11160 76.1 1.5e-55 212.6
Chy03g01586 . 95 234 PRT Gene Family AT5G11160 72.9 9.7e-55 209.9
Chy06g02026 . 10 147 PRT Gene Family AT5G11160 72.5 2.4e-53 205.3
Chy03g00477 . 1 188 PRT Gene Family AT1G71750 64.8 4.4e-70 261.2
Chy06g01388 . 19 482 PRT Gene Family AT1G55810 73.3 3.0e-199 691.4
Chy06g01388 . 80 482 PRT Gene Family AT3G27440 75.4 8.3e-180 626.7
Chy06g01388 . 1 483 PRT Gene Family AT3G27190 86.4 1.8e-247 851.7
Chy08g00711 . 3 289 PRT Gene Family AT3G53900 66.6 3.9e-107 384.8
Chy06g01388 . 11 482 PRT Gene Family AT4G26510 75.4 8.6e-210 726.5
Chy06g01388 . 1 482 PRT Gene Family AT5G40870 86.3 7.0e-247 849.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01111 Chy_Chr09 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 10.07605 0.0 0.0