Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01118 GTTAGTGTTCCTTGTTGTAGTTTGTTTAAAACTGTGACAGTGAGATGTGGACATTGCACTAATCTGTTGCCAGTCAACATGCGTGGCCTTCTTTTGCCTTCACCTAATCAATTTCATCAGCTTGGCCATTCTTTCTTTTCTCCCTCTCATAACATTATCGAAAATATGGCTACACCAAATTCTAATTATCTGATCAACCAATTTGGAGCTACTACTAACAATTTTGGTATGCCATCTCGAGGAGTTACTGATGAGCTCCCTAGGCCACCCGTCGTCAACAGACCTCCTGAGAAGAGACAGAGAGTGCCATCTGCATACAACCGTTTCATCAAAGATGAGATCCAACGCATTAAGTCTGTGAATCCCGATATATCCCATAGAGAAGCCTTCAGTGCCGCTGCTAAGAATTGGGCCCACTTTCCACACATTCACTTTGGTCTCATGCCCGACCAGACAGTGAAGAAGACAAATATCCGTCAGCAGGAACAAGGAGATGCTCAGAATGTTCTGATGAAAGACAATGGATTTTATGCCTCAGCCAATGTTGGTGTCTCCCATTTCTAA 564 43.44 VSVPCCSLFKTVTVRCGHCTNLLPVNMRGLLLPSPNQFHQLGHSFFSPSHNIIENMATPNSNYLINQFGATTNNFGMPSRGVTDELPRPPVVNRPPEKRQRVPSAYNRFIKDEIQRIKSVNPDISHREAFSAAAKNWAHFPHIHFGLMPDQTVKKTNIRQQEQGDAQNVLMKDNGFYASANVGVSHF* 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13448472 13450106 + Chy9G168340.1 Chy09g01118 234015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01118 187 SUPERFAMILY HMG-box 91 140 IPR036910 -
Chy09g01118 187 Pfam YABBY protein 1 147 IPR006780 GO:0007275
Chy09g01118 187 Gene3D High mobility group box domain 91 168 IPR036910 -
Chy09g01118 187 MobiDBLite consensus disorder prediction 80 100 - -
Chy09g01118 187 PANTHER AXIAL REGULATOR YABBY 3 1 185 - -
Chy09g01118 187 PANTHER PROTEIN YABBY 6-RELATED 1 185 IPR006780 GO:0007275
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy06g02018 Chy09g01118 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02016 Chy-Chr2:24105583 Chy09g01118 Chy-Chr9:13448472 8.61E-28 dispersed
Chy05g00195 Chy-Chr5:1593841 Chy09g01118 Chy-Chr9:13448472 3.81E-31 dispersed
Chy05g01308 Chy-Chr5:17281744 Chy09g01118 Chy-Chr9:13448472 2.75E-30 dispersed
Chy09g01118 Chy-Chr9:13448472 Chy10g00892 Chy-Chr10:14685669 6.19E-34 dispersed
Chy06g02018 Chy-Chr6:24129827 Chy09g01118 Chy-Chr9:13448472 2.66E-50 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18506 PF04690 YABBY 1.80E-57 CL0114 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01118 K25796 - csv:101214748 392.504