Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01140 ATGGCGGCTACGAACTCGTCTACTACAGCAGCAGCAACGGCAGCGGCTCCGGCAGTGGAGAGTGGGAGTTCCTCAGCAGATGAGGTGACTGCTAAAGCCGTACAGAAGCGATACGAAGGACTGGTAATGGTACGGACGAAGGCTATAAAGGGTAAAGGGGCTTGGTACTGGGCTCACCTCGAACCCATCCTCGTCCATAATACTGACACTGGTTTGCCCAAAGCCGTTAAACTCAGGTGTTCTTTATGCGACGCCGTTTTCTCCGCCTCAAACCCTTCTCGAACCGCCTCCGAGCATCTCAAACGGGGCACTTGCCCCAATTTCAACTCCCTCCCTAAACCCATTTCCTCTGTTTCCCCTTCTTCCTTTCTTCCTCCAACTCCCACTTCTCCACCGCCTCTTCACCATTCCAATAACCGCAAACGGACCTCCTCCGCTGTCGCCGCCTCTTCCGGCGACCGCGCCGGAGGTGGCGGCTCTTCTTACCAAGTCCCACCTCTTGCCATTGTGGATCCTTCGCGGTTTTGTGGGGAACTGACGTATTCACCGTCGGTGGGGGTGAGCGGTGGCGGCGGAGGTGGGGGCTTGTTGGGGCAGCAGCCGCATTTGATGCTGTCAGGGGGGAAGGAGGACTTGGGAGCTTTGGCTATGTTGGAGGACAGTGTGAAGAAGCTAAAGAGTCCAAAAACTTCACCTGGGCCAACGCTGAGCAAGACGCAGATTGATTGTGCAATTGATTTTCTTGCCGATTGGGTCTACGAATCCGGTGGCTCTGTGTCGTTTTCGAGCTTGGAACATCCTAAATTCAGGGCGTTTCTTAACCAAGTTGGACTACCTGCAATCTCTCGCCGGGATTTTACAAATTCCCGACTGAATTCGAAGTTCGAGGAAGCTAAAGCAGAATCTGAAGTTAAGATTCGAGATGCTATGTTTTTCCAGCTCGCCTCCGATGGGTGGAAGGACAAAAACTACGCCGTTTTTGGCATTGATAAGCTTGTGAATCTCACTGTGAATCTCCCCAATGGGACTAGCTTGTACCGGCGGGCTGTGTTCGTGAGTGGCTCTGTTCCTTCTTCTTATGCTCAGGAAATTTTGTGGGAAACCGTCGCTGATATCAGTGGGAATGTTGTTCAACAGTGTGTTGGGATTGTAGCAGACAAGTTCAAGGCTAAGGCATTGAAGAATTTGGAGAATCAAAATAACTGGATGGTTAATCTCTCTTGTCAGTTTCAGGGTTTTTCCAGTTTGGTTAAGGATTTCAGCAAACAGCTCCCATTGTTCAATAGTGTCACTGAGCATTGTATGAAGCTCGCTAATTTCGTTAATTACAAGTCTCAGATTCGTAATTGTTTCCATAAAGTTCAGCTGCAAGAGTACGGTAATGCCATGTTACTCCGAGTGCCACCCCGTAACCACGAGAAGCTCAACTTTGGGCCTGTCTTCACGTTAATGGAAGACATTCTCAGCTTCTCTCGAGCTCTGCAGCTGGTTGTACTTGATGAGACCTGGAAAATCGCATCGGTGGACGACCCGATAGCGAGAGAAGTTGCGGAGTTGATTGGGGATGTGGGATTTTGGAATGAATTGGAGGCAGTTCACTCTTTGGTTAAATTAATAACAGACATGGCTGTTGAGATTGAGAAAGAGAGGCCACTAGTTGGGCAATGCCTTCCATTGTGGGATCAACTGAGGGGGAAAGTCAAAGATTGGTGTTCAAAATTTCAGATTGCTGAAGGTCCTGTTGAGAAAGTGATTGAAAAGAGGTTCAAAAAGAACTACCACCCGGCTTGGGCTGCGTCGTTTATCCTCGATCCGTTGTATTTGATAAGGGACACAAGCGGGAAGTATCTCCCACCATTCAAATGCCTGACTCCTGATCAAGAGAAAGATGTGGATAAACTCATAACCCGGCTAGTGTCGAGGGAGGAAGCTCACATTGCATTAATGGAGCTTATGAAATGGAGGACAGAAGGGCTTGATCCAGTTTATGCAAGAGCTGTGCAAATGAAAGAAAGAGACCCTATAACTGGGAAGATGAGAGTTGCTAATCCACAAAGCAGTAGACTTGTTTGGGAAACTTATCTTACGGAATTCAAGTCCTTAGGCAAAGTTGCAGTGAGACTCATATTCCTTCATGCCACTTCCTGTGGTTTCAAATGCAATTGGTCTTTGTTGAGATGGGTGTCTTCTCATACTCACCAAAAGGCTGGTATGGATAGGGCACAGAAGTTGATATTCATTTCAGCTCATTCGAAGCTCGAACGGAGGGATTTTTCCACCGACGAAGACAAGGATGCCGAGCTATTCTCCCTAGCCAACGGTGAGGATGATGTGCTTAATGAAGTCTTCGCGGATACATCCTCGGTGTAA 2370 48.4 MAATNSSTTAAATAAAPAVESGSSSADEVTAKAVQKRYEGLVMVRTKAIKGKGAWYWAHLEPILVHNTDTGLPKAVKLRCSLCDAVFSASNPSRTASEHLKRGTCPNFNSLPKPISSVSPSSFLPPTPTSPPPLHHSNNRKRTSSAVAASSGDRAGGGGSSYQVPPLAIVDPSRFCGELTYSPSVGVSGGGGGGGLLGQQPHLMLSGGKEDLGALAMLEDSVKKLKSPKTSPGPTLSKTQIDCAIDFLADWVYESGGSVSFSSLEHPKFRAFLNQVGLPAISRRDFTNSRLNSKFEEAKAESEVKIRDAMFFQLASDGWKDKNYAVFGIDKLVNLTVNLPNGTSLYRRAVFVSGSVPSSYAQEILWETVADISGNVVQQCVGIVADKFKAKALKNLENQNNWMVNLSCQFQGFSSLVKDFSKQLPLFNSVTEHCMKLANFVNYKSQIRNCFHKVQLQEYGNAMLLRVPPRNHEKLNFGPVFTLMEDILSFSRALQLVVLDETWKIASVDDPIAREVAELIGDVGFWNELEAVHSLVKLITDMAVEIEKERPLVGQCLPLWDQLRGKVKDWCSKFQIAEGPVEKVIEKRFKKNYHPAWAASFILDPLYLIRDTSGKYLPPFKCLTPDQEKDVDKLITRLVSREEAHIALMELMKWRTEGLDPVYARAVQMKERDPITGKMRVANPQSSRLVWETYLTEFKSLGKVAVRLIFLHATSCGFKCNWSLLRWVSSHTHQKAGMDRAQKLIFISAHSKLERRDFSTDEDKDAELFSLANGEDDVLNEVFADTSSV* 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13633256 13635625 - Chy9G168560.1 Chy09g01140 234037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01140 789 MobiDBLite consensus disorder prediction 119 133 - -
Chy09g01140 789 PANTHER OSJNBA0013A04.12 PROTEIN 18 785 - -
Chy09g01140 789 MobiDBLite consensus disorder prediction 1 30 - -
Chy09g01140 789 MobiDBLite consensus disorder prediction 116 163 - -
Chy09g01140 789 MobiDBLite consensus disorder prediction 134 150 - -
Chy09g01140 789 PANTHER F16P17.2 PROTEIN 18 785 - -
Chy09g01140 789 SUPERFAMILY Ribonuclease H-like 355 752 IPR012337 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01140 - - - csv:101211194 1448.34
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy06g02000 Chy09g01140 CCT
Chy06g02000 Chy09g01140 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g00973 Chy-Chr9:12432071 Chy09g01140 Chy-Chr9:13633256 0 transposed
Chy09g01414 Chy-Chr9:15792054 Chy09g01140 Chy-Chr9:13633256 4.66E-06 transposed
Chy06g02000 Chy-Chr6:23974261 Chy09g01140 Chy-Chr9:13633256 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g477 Blo02g01065 . . . Bpe05g00602 . Bma07g01615 Bma14g00563 . Cmo16g01085 . Cma15g01167 Car02g01269 Car15g01056 . Cpe14g00858 . . . . . . . . . . . . . . . . . . . Lsi07g01349 . Chy09g01140 Cme06g02636 . . Bda07g00519 Bda09g00079 Bpe08g01450 Bpe11g00706 . . . Cmo02g01548 Cmo15g01229 . Cma16g01039 . Car16g00989 . . Bhi12g00575 . . . . . . . . . . . . . . Csa03g00324 Chy06g02000 Cme09g01671
Vvi16g494 Blo06g01097 . . . . . . . . . Cma02g01010 Cma15g01382 Car02g00754 Car15g01248 . Cpe05g00711 . . . . . . . . . . . . . . . . . . . . Csa05g00541 Chy09g01140 . . . . Bda15g00755 . Bpe12g00398 Bma08g00357 . . Cmo02g01025 Cmo15g01445 . . . . . Cpe13g00069 Bhi12g00576 . . . . . . . . . . . . . Lsi09g00543 . . Cme09g01496
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005683 3 1 1 2 2 1 2 1 1 1 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01140 Chy_Chr09 FPKM 21.158249 29.630053 28.642437 29.363571 35.056564 38.918083 23.309061 33.470329 35.269291 27.845556