Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01141 ATGCTCGGTTCCGATCTAAAATTCTTCTTGAACAGCTCTGTACATGTCAAACAAGCTACTCAAATTCATGCCCACATTCTCGTCAATGGGCTTCCAAATCTCGAGTCTTGCTTGGTCCGTCAAATCACTCGTTCTCGGTTCACTTGCGCCAGAATTGTATCCCGTTATCTCCAACGAATTCTTCACCATTCACAAAATCCAGATGCTTTCACATGGACCTGCGCCGTTCGGTTCTTTTCCCAGAATGGTCAGTTCATGGAAGCAATTGCCCATTATGTTCAGATGCAGAGATTGGGACTGCATCCGAGCACTTTTGCTGTATCCTCGACTTTGAGAGCTTGCGGTAGGATTATGTGTAAGTTGGGTGGGTGGTGTATTCATGCTCAGGTTTATAAGTTGGGGTTTTGTCGCTGTGTTTACGTGCAAACTGCCCTTGTGGATTTTTACTCAAAACTGGGAGATATGGGTTTTGCTCAGAAGGTGTTTGATGAGATGACCGAGAAAAATGTGGTTTCGTGGAATTCAATCTTGTCTGGTTATGTGAAAATTGGGAACTTACTTGACGCTCAAAAAGTGTTTGATGAAATGCCTGTGAAAGATGTCATATCTTGGAATTCGATGTTGACAGGATTCTCCAATTCTGGAAATATGGATCGAGCGTGGTGTTTATTTCAACAAATGAGGGAGAAAAGTTCGGCTTCTTGGAATGCGATGATCAGTGGCTATGTGAATTGTGGAGACATGAAGGCTGCGAGAAACCTGTTTGATGTAATGCCTAACAGAAATAATGTTACACGGATTACATTGATTGCTGGGTATTCGAAGCTTGGGGAGGTTAATTCTGCTTGTGAGCTCTTTGATAAGATGGATGAAAATGAGAAGGAGCTTCTCTCATGTAACGCCATGATTGCTTGCTATTCACAAAATAGTATGCCTAACAAAGCATTGGAGTTATTCAACCTAATGCTTCAACCCCATGTGAATATCCAACCCGATGAGATGACTTTTGCTAGCGTTATATCTGCTTGTACTCAGCTGGGAAATCTGAGCTATGGTACTTGGATTGAGTCATATATGGAAAAACTTGGGATTGAGTTGGATGATCATTTGGCGACTGCATTAGTAGATCTATATGCAAAATCCGGGAACATCGACAGGGCATTTGAGCTGTTTAATGGTCTGAAAAAGAGGGATTTAGTCGCTTATTCAGCTATGATCTTTGGATGTGGGATAAATGGTAAGGCCCATGAAGCAATCAGGTTATTCAAAGAGATGCTAAGAGTTAACATCTCCCCGAATCTAGTGACGTATGCTGGTCTTCTTACAGCGTATAATCATGCCGGTTTAGTTGATGAAGGTTACCTTTGCTTCTCGTCCATGAAGAACCATGGACTTGCGCCACTAGCTGATCATTACGGGATCATGGTGGATCTGTTGGGGAGGGCGGGGCGGTTAGAAGAAGCATATGAGCTTATAAACAGTATGCCAGTGCAGCCAAATGCTGGTGTCTGGGGAGCCTTGCTTCATGCATGTAAATTACATAACAATGTTGAGCTTGGTGAGATAGCAGCTCGAAATTGCTCGAAGTTGGTGACTGATACAACCGGATATCGGTCTCTTCTAGCCAACATTTACTCTTCTATGGAGAGGTGGGATGATGCTAAGAGGATGAGAAAAGCCATGGGAAATAAAGTATTTGCCAAGATATCTGGGTGTAGTTGGATGGAGCAATCTGAAAGCTGA 1743 42.97 MLGSDLKFFLNSSVHVKQATQIHAHILVNGLPNLESCLVRQITRSRFTCARIVSRYLQRILHHSQNPDAFTWTCAVRFFSQNGQFMEAIAHYVQMQRLGLHPSTFAVSSTLRACGRIMCKLGGWCIHAQVYKLGFCRCVYVQTALVDFYSKLGDMGFAQKVFDEMTEKNVVSWNSILSGYVKIGNLLDAQKVFDEMPVKDVISWNSMLTGFSNSGNMDRAWCLFQQMREKSSASWNAMISGYVNCGDMKAARNLFDVMPNRNNVTRITLIAGYSKLGEVNSACELFDKMDENEKELLSCNAMIACYSQNSMPNKALELFNLMLQPHVNIQPDEMTFASVISACTQLGNLSYGTWIESYMEKLGIELDDHLATALVDLYAKSGNIDRAFELFNGLKKRDLVAYSAMIFGCGINGKAHEAIRLFKEMLRVNISPNLVTYAGLLTAYNHAGLVDEGYLCFSSMKNHGLAPLADHYGIMVDLLGRAGRLEEAYELINSMPVQPNAGVWGALLHACKLHNNVELGEIAARNCSKLVTDTTGYRSLLANIYSSMERWDDAKRMRKAMGNKVFAKISGCSWMEQSES* 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13646780 13648522 + Chy9G168570.1 Chy09g01141 234038

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01141 580 PANTHER OS07G0578800 PROTEIN-RELATED 229 577 IPR045215 GO:0003723|GO:0009451
Chy09g01141 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Chy09g01141 580 Pfam PPR repeat 70 100 IPR002885 -
Chy09g01141 580 Pfam PPR repeat 471 495 IPR002885 -
Chy09g01141 580 Pfam PPR repeat 234 261 IPR002885 -
Chy09g01141 580 Pfam PPR repeat 268 292 IPR002885 -
Chy09g01141 580 PANTHER OS08G0162200 PROTEIN 54 167 - -
Chy09g01141 580 Gene3D Tetratricopeptide repeat domain 378 580 IPR011990 GO:0005515
Chy09g01141 580 Gene3D Tetratricopeptide repeat domain 11 120 IPR011990 GO:0005515
Chy09g01141 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Chy09g01141 580 Pfam E motif 514 576 IPR046848 -
Chy09g01141 580 PANTHER OS08G0162200 PROTEIN 166 229 - -
Chy09g01141 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 262 296 IPR002885 -
Chy09g01141 580 SUPERFAMILY TPR-like 268 557 IPR011990 GO:0005515
Chy09g01141 580 Pfam PPR repeat 169 196 IPR002885 -
Chy09g01141 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Chy09g01141 580 SUPERFAMILY TPR-like 67 292 IPR011990 GO:0005515
Chy09g01141 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 199 IPR002885 -
Chy09g01141 580 PANTHER OS07G0578800 PROTEIN-RELATED 166 229 IPR045215 GO:0003723|GO:0009451
Chy09g01141 580 PANTHER OS07G0578800 PROTEIN-RELATED 54 167 IPR045215 GO:0003723|GO:0009451
Chy09g01141 580 TIGRFAM PPR: pentatricopeptide repeat domain 202 230 IPR002885 -
Chy09g01141 580 TIGRFAM PPR: pentatricopeptide repeat domain 472 495 IPR002885 -
Chy09g01141 580 TIGRFAM PPR: pentatricopeptide repeat domain 435 467 IPR002885 -
Chy09g01141 580 TIGRFAM PPR: pentatricopeptide repeat domain 372 400 IPR002885 -
Chy09g01141 580 TIGRFAM PPR: pentatricopeptide repeat domain 298 323 IPR002885 -
Chy09g01141 580 TIGRFAM PPR: pentatricopeptide repeat domain 171 199 IPR002885 -
Chy09g01141 580 TIGRFAM PPR: pentatricopeptide repeat domain 400 433 IPR002885 -
Chy09g01141 580 TIGRFAM PPR: pentatricopeptide repeat domain 234 261 IPR002885 -
Chy09g01141 580 TIGRFAM PPR: pentatricopeptide repeat domain 268 292 IPR002885 -
Chy09g01141 580 Pfam PPR repeat family 199 231 IPR002885 -
Chy09g01141 580 Pfam PPR repeat family 398 444 IPR002885 -
Chy09g01141 580 Pfam PPR repeat family 298 343 IPR002885 -
Chy09g01141 580 Gene3D Tetratricopeptide repeat domain 231 293 IPR011990 GO:0005515
Chy09g01141 580 Gene3D Tetratricopeptide repeat domain 294 353 IPR011990 GO:0005515
Chy09g01141 580 Gene3D Tetratricopeptide repeat domain 125 230 IPR011990 GO:0005515
Chy09g01141 580 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Chy09g01141 580 PANTHER OS08G0162200 PROTEIN 229 577 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01141 - - - csv:101219504 1133.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01141 Chy-Chr9:13646780 Chy02g01976 Chy-Chr2:23518489 2.41E-118 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g473 . . . . . . . Bma14g00564 . . . Cma15g01168 . Car15g01057 . . . . . . . . . . . . . . . . . . . . . . Csa05g00369 Chy09g01141 . Blo03g00389 . Bda07g00518 . . Bpe11g00705 . . . . Cmo15g01230 . . . . . . Bhi12g00368 . . Lac11g2208 Hepe06g1629 . . Cla01g00344 . . . . . . . . . Cme09g01672
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010341 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01141 Chy_Chr09 FPKM 18.044365 19.856356 38.279331 35.471443 6.102209 5.474144 5.6088 85.788292 88.580009 84.931473