Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy09g01142 ATGTCGACCACAAGTTTCCGGCGAAGAATTCCGGCCATTTCCAGTACATCCAACAAACACACACGCCATAATCTCTCTCAATCTCCTCACCGGAGAACTCCCTCGACGAATCGCGCTCCTTCCAAGCCCTCCAAATTCACCAGATGTTCCTCGGAACCCAACCTTTGGACCACTGCCATCACCAGCGCCGCCGCTGATCGGACTTTTTCCTCGGAGAAGGAAGGGGAAGAGGTTGTTATTTTTCGTCCTCATACGTTTTCGGAAGCCTTTGGTTCATCTCCTCTGTTGATTCCTTCAACCGATCAACTACTCGAGGGCTACAAAAAAGATGCTAAAGTAGTGATCAATGTGACGGTTGAAGGGAGTCCAGGACCAGTACGAGCCATGATCAAACTAGGATCTAATGTTGATGACACAATCAAACTAGTTGTTGCTAAATATATTGAAGAAGGAAGAACTCCAAAGTTTGAACCAACTACATCACCATCCTCCTTTGAATTGCATCACTCTTATTTCAGCCTCCAGAGTCCATTCGGAGGAGCAAAACCTAATATTACTGCGGAATTCTATGGAAAAGTTCACACAAGTTTGCAGACCAGGACAAATAACAAAAAGGCTGCTCGTGCACAATTTCAGATGATGCCTATAGGGACTCCAAGGGTGCCTTACAAAACTCCTGGGGAGGGATTTTGGCAATGGGTTGATTTGTGGAATGCACTGTATCGAGAACGAGTTATCTTCATTGGGGATTACGTTGATGAAGAGTTTAGCAATCAAATTTTGGCAACAATGCTATATCTTGACAGCGTTGAAGCTTCCAAGAAACTCTATATTTACATAAATGGCCCAGGTGGAGATCTAACTCCAACTTTGGCCCTCTACGATACAATGCAAAGCTTGAAGAGTCCTATAGCTACGCATTGTATGGGTCAGGCCTATAATATGGCAGCCTTTCTTCTAGCAGCTGGAGAAAAGGGTAACCGCTCTGCTATGCCACTATCACGAATTGCTTTACAATCCCCAGCCGGATCTGCTCGTGGCCGGGCTGATGATATTCAAAATGAAGCAAACCAGCTCTTAAAAATCAGGGATTATCTTTTTGATGAGCTTTCTAAGAAAACAGGCCAGCCTATTGAAAAGATTCACAAGGACTTGAGTGGAACTAAGCGATTTAATGCGCAGCAAGCTCTTGAGTATGGACTTATTGACCGTATAGCTAGGCCAGCACGCATTAAGGCTGATGCACCTCGCAAGGATGATGGAACAGGGCTTGGTTAG 1278 45.07 MSTTSFRRRIPAISSTSNKHTRHNLSQSPHRRTPSTNRAPSKPSKFTRCSSEPNLWTTAITSAAADRTFSSEKEGEEVVIFRPHTFSEAFGSSPLLIPSTDQLLEGYKKDAKVVINVTVEGSPGPVRAMIKLGSNVDDTIKLVVAKYIEEGRTPKFEPTTSPSSFELHHSYFSLQSPFGGAKPNITAEFYGKVHTSLQTRTNNKKAARAQFQMMPIGTPRVPYKTPGEGFWQWVDLWNALYRERVIFIGDYVDEEFSNQILATMLYLDSVEASKKLYIYINGPGGDLTPTLALYDTMQSLKSPIATHCMGQAYNMAAFLLAAGEKGNRSAMPLSRIALQSPAGSARGRADDIQNEANQLLKIRDYLFDELSKKTGQPIEKIHKDLSGTKRFNAQQALEYGLIDRIARPARIKADAPRKDDGTGLG* 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 13650222 13659254 + Chy9G168580.1 Chy09g01142 234039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy09g01142 425 Pfam Clp protease 232 407 IPR023562 -
Chy09g01142 425 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 173 419 IPR023562 -
Chy09g01142 425 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 217 409 IPR001907 GO:0004176|GO:0004252|GO:0006508
Chy09g01142 425 SUPERFAMILY ClpP/crotonase 231 408 IPR029045 -
Chy09g01142 425 PRINTS Clp protease catalytic subunit P signature 275 295 IPR001907 GO:0004176|GO:0004252|GO:0006508
Chy09g01142 425 PRINTS Clp protease catalytic subunit P signature 306 323 IPR001907 GO:0004176|GO:0004252|GO:0006508
Chy09g01142 425 PRINTS Clp protease catalytic subunit P signature 384 403 IPR001907 GO:0004176|GO:0004252|GO:0006508
Chy09g01142 425 PRINTS Clp protease catalytic subunit P signature 235 250 IPR001907 GO:0004176|GO:0004252|GO:0006508
Chy09g01142 425 PRINTS Clp protease catalytic subunit P signature 327 346 IPR001907 GO:0004176|GO:0004252|GO:0006508
Chy09g01142 425 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT-RELATED PROTEIN 2, CHLOROPLASTIC 173 419 - -
Chy09g01142 425 CDD S14_ClpP_2 235 405 IPR001907 GO:0004176|GO:0004252|GO:0006508
Chy09g01142 425 MobiDBLite consensus disorder prediction 1 50 - -
Chy09g01142 425 Gene3D - 207 414 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy09g01142 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - csv:101210460 503.442
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01142 Chy-Chr9:13650222 Chy11g00395 Chy-Chr11:3740254 2.56E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g469 . . Bda06g00053 . . Bpe07g00146 . . . Cmo16g01198 Cma02g01509 Cma15g01171 . Car15g01060 . Cpe14g00951 . . . . . . . . . . . . . . . Cone8ag0358 Cone12ag0350 . . . Csa05g00366 Chy09g01142 . . . . . . . . Bma12g00130 . . Cmo15g01233 . Cma16g01147 . Car16g01144 . . Bhi12g00364 . . . . . . . . . . . . . Lsi09g00370 . . Cme09g01674
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002594 3 2 3 4 3 1 2 1 1 1 1 1 1 2 2 3 1 4 1 1 2 2 2 1 2 2 2 4 3 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy09g01142 Chy_Chr09 FPKM 18.225883 21.953352 12.598161 11.200572 26.497166 24.208141 29.845436 5.845132 6.956691 6.989614