Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Chy09g01146 | ATGGATTCCCACTCCCTTCCCCCTCCTTTCCACACCCGTGATTTCCATCTCCAACAACATCCATTCCACACCAACACCAACAACAATTCCGAAGAAGAACATAGCACCACCACCACCCGTCTCAAACGCGACCGTGATGACGACACCAACAACTCCAACCCCAACTCCGCTGGCGACCCCACCCCAGACGGAGAAATCACTCGTCGCCCTAGAGGACGCCCTGCTGGATCCAAAAACAAACCTAAACCCCCCATTATCATTACTCGCGACAGCGCCAACGCTCTCCGTACTCACGTCATCGAAGTCACCGATGGCTGTGACATCGTCGATAGCGTCGCTACCTTCGCTAGACGTCGTCAACGTGGTGTTTGTATTATGAGTGGTACTGGTACGGTTACAAACGTTACTCTCCGTCAACCCGCTTCCCCCGGTGCAATTGTCAACTTACATGGTCGCTTCGAGATCTTATCTCTAGCCGGTTCGTTTCTTCCTCCTCCTGCTCCTCCAGCTGCTACTACTTTGACTATTTATCTTGCTGGTGGTCAAGGGCAAGTCGTCGGTGGTAGCGTTGTTGGTACTTTGATCGCTTCTGGTCCTGTCGTTATTATGGCTGCTTCCTTTAGTAACGCGGCGTATGAACGGCTTCCATTGGAGGAAGACGATCAACCACAGCTTCCGTCGCTGCAAGGCGGCGGGGGAATTGGGTCGCCGGATGAAGTTGGGCAGTCACAAATAACGGCGCAAACGGCACATCATCAACAACAGCAACAGAATCAACAACAACAGCAGCAACTACTTAACGATGGGAATGCGCCGTTATTTCACGGTTTGCCTCCGAATCTCTTGAATTCAATTCAAATGCCACCGTCGGAATCACCGTATTGGGCAACTGCCCGTCCTCCCTACTAA | 909 | 52.15 | MDSHSLPPPFHTRDFHLQQHPFHTNTNNNSEEEHSTTTTRLKRDRDDDTNNSNPNSAGDPTPDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHVIEVTDGCDIVDSVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVNLHGRFEILSLAGSFLPPPAPPAATTLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEEDDQPQLPSLQGGGGIGSPDEVGQSQITAQTAHHQQQQQNQQQQQQLLNDGNAPLFHGLPPNLLNSIQMPPSESPYWATARPPY* | 303 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 13721525 | 13722433 | + | Chy9G168620.1 | Chy09g01146 | 234043 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Chy09g01146 | 302 | ProSiteProfiles | PPC domain profile profile. | 92 | 231 | IPR005175 | - | |
| Chy09g01146 | 302 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 96 | 209 | IPR005175 | - | |
| Chy09g01146 | 302 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 3 | 302 | IPR014476 | GO:0003680 | |
| Chy09g01146 | 302 | MobiDBLite | consensus disorder prediction | 1 | 87 | - | - | |
| Chy09g01146 | 302 | CDD | DUF296 | 96 | 162 | IPR005175 | - | |
| Chy09g01146 | 302 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 92 | 224 | - | - | |
| Chy09g01146 | 302 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED | 3 | 302 | - | - | |
| Chy09g01146 | 302 | MobiDBLite | consensus disorder prediction | 221 | 302 | - | - | |
| Chy09g01146 | 302 | PIRSF | ESCAROLA | 10 | 302 | IPR014476 | GO:0003680 | |
| Chy09g01146 | 302 | MobiDBLite | consensus disorder prediction | 19 | 34 | - | - | |
| Chy09g01146 | 302 | MobiDBLite | consensus disorder prediction | 35 | 50 | - | - | |
| Chy09g01146 | 302 | Gene3D | - | 95 | 227 | - | - | |
| Chy09g01146 | 302 | MobiDBLite | consensus disorder prediction | 239 | 269 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Chy06g00280 | Chy-Chr6:1884621 | Chy09g01146 | Chy-Chr9:13721525 | 5.94E-66 | dispersed | |
| Chy09g01146 | Chy-Chr9:13721525 | Chy11g01953 | Chy-Chr11:25567509 | 1.03E-72 | dispersed | |
| Chy11g01989 | Chy-Chr11:25805445 | Chy09g01146 | Chy-Chr9:13721525 | 1.18E-79 | wgd | |
| Chy06g00234 | Chy-Chr6:1550149 | Chy09g01146 | Chy-Chr9:13721525 | 7.19E-74 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Chy09g01146 | - | - | csv:101209716 | 511.146 |